Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1081 ATGGGGAGAGGAAGAGTGCAGTTGAAGAGGATTGAGAACAAAATCAATAGACAAGTAACTTTTTCGAAAAGACGGTCTGGTTTGTTGAAGAAAGCTCATGAGATCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATAGTTTTCTCTACTAAAGGCAAGCTTTTTGAATACTCTAGCGATCCTTGTATGGAAAGAATTCTTGAACGATATGAGAGATATTCTTATACGGAGAGACAGCTTGTTGCAAATGATCAATCACCAAATGAAAACTGGGTTCTAGAACATGCAAAACTGAAAGCTAGGGTGGAAGTACTTCAGAAAAATCAAAGGAATTATATGGGAGAAGAGTTGGATGGGTTAAGTCTCAAAGAGCTTCAGAGTTTGGAACAACAACTTGATTCTGCTCTCAAACACATTAGGTCACGGAAGAATCAAGTCATGTATGAATCTATTTCAGAACTTCAGAAAAAGGATAAGGCACTCCAAGAACATAACAACTTGCTCGCCAAGAAGATAAAGGAAAAAGAGAAAGAACTTGCTCAAGAGGAGGTGCAAAATAGCATGGAGGTGGCTCTAATTGAAACTCAACCATTGGAATCCATGATTGCAGGAGGGTCCTCCTTACAAGAAAATTGCAACGAAGAAACCGGAGCAGAAACTCGAGGAAGTGCCGTTCTTCCGCCGTGGATGATTCGTCCTTTAAATGAATAG 711 0.3994 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYTERQLVANDQSPNENWVLEHAKLKARVEVLQKNQRNYMGEELDGLSLKELQSLEQQLDSALKHIRSRKNQVMYESISELQKKDKALQEHNNLLAKKIKEKEKELAQEEVQNSMEVALIETQPLESMIAGGSSLQENCNEETGAETRGSAVLPPWMIRPLNE* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1081 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 - -
Psa4g1081 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa4g1081 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa4g1081 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa4g1081 236 Coils Coil 88 108 - -
Psa4g1081 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g1081 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa4g1081 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g1081 236 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g1081 236 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Psa4g1081 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 184 - -
Psa4g1081 236 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Psa4g1081 236 Coils Coil 154 190 - -
Psa4g1081 236 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Psa4g1081 236 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g1081 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Psa4g1081 236 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1081 Psa-Chr4 79272735 79277194 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1081 1 185 MADS-box Gene Family AT1G26310 68.449 2.16e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa4g1081 K-box 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1081 K09264 K09260 gmx:100805348 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1496 1 101267006 101270162 Psa4g1081 4 79272735 79277194 ECH
Psa3g4635 3 429768699 429772820 Psa4g1081 4 79272735 79277194 ECH
Psa4g1081 4 79272735 79277194 Psa4g1081 4 79272735 79277194 ECH