Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1060 ATGGCTGATGTAACCTATCTCCGTCACCACCACGAACCCGACGATGATCAAACCCTAATCCCTTTACCCTATTGGTCTTCCCCTTCCGATTTCGATCTCGATTTTGATCTCGATTTGTTCTCCTCCGACCTCGATTTCCATCCCCACCACCACCACCACTTCTCTCGTGAAAATTTCGTCATGGATCTCTTTCAACAGCGTGTAGAGCAATCTCACGTCATCGATCACACCGATCCTATCCATCAGTCCTTAAACGACTCCGTTTTCGACAGTTTGAGTCTCGATTTAGGGTTAAACTCTACCGATCTATACATCGAGGACGATGATTTTACCGATTCGAGGGTTTCGAGATCAGATCCAATCAACGGCTTGCGTATCGTTGAGATTGATTCGGAATCTGACGGTGAGGAAGTAGACGGAGACGGAAACAGGGACAACGTGTTGTATGGGATCTGCGTGCATTCTGATGAAGAAGAGTTTAGCAATGTAATCGAGGATGTTACGAATTTTCCTTTCCGTTGGGATTCTCTTCAGTTGGATGATAATCAGATATATGAAGATTTTGATTGGGAGGAAGTTGACGGTCGTTTAGACGGGATGCCGGTTGGTAACGGCAACAATGTCAACAATAGGGCAGTTAGCGCTGTTCGTGATTTTCCGTATATCGAAGAAGAATCAGAAGAAGACGGAGGAGAGCTTACATTGACAAGGGTTGGTGAAGGCATGGGGAATCTCGAGTGGCAAGTGTTGTCGAATTCGGATAATTTAGGCACAAGCCCTGAAACTTACCATGTAATTGCAGAGCCTTTTGAGGACAATGATGATTACATTTACACTGCAGAGTATGAGATGATGGTTGGTCAATTCATAGGTAATGATAACCCTTCTATGGGGAGGCCTCCCGCTTCTGTTACTGTTGTGCAGAATCTTCCTTTGGTGGTTGTGACCAAAGAGGACGTGGACAACAACAATGCTCTGTGTGCAGTCTGTAAAGATGAATTTGCTGTTGGAGATGAGGTGAAGTTGTTGCCGTGTACTCATCGATACCATGGCGATTGCATTGTGCCGTGGTTGGGGATTAGGAATACTTGTCCTGTTTGTCGCTATGAGTTCCCCACAGATGATGCTGATTATGAACGTAGGAAAGCGCCGATGCTGGCCCGGAGCGCTTGA 1173 0.4604 MADVTYLRHHHEPDDDQTLIPLPYWSSPSDFDLDFDLDLFSSDLDFHPHHHHHFSRENFVMDLFQQRVEQSHVIDHTDPIHQSLNDSVFDSLSLDLGLNSTDLYIEDDDFTDSRVSRSDPINGLRIVEIDSESDGEEVDGDGNRDNVLYGICVHSDEEEFSNVIEDVTNFPFRWDSLQLDDNQIYEDFDWEEVDGRLDGMPVGNGNNVNNRAVSAVRDFPYIEEESEEDGGELTLTRVGEGMGNLEWQVLSNSDNLGTSPETYHVIAEPFEDNDDYIYTAEYEMMVGQFIGNDNPSMGRPPASVTVVQNLPLVVVTKEDVDNNNALCAVCKDEFAVGDEVKLLPCTHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRKAPMLARSA* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1060 390 SMART ring_2 327 367 IPR001841 -
Psa4g1060 390 Pfam Ring finger domain 327 368 IPR001841 -
Psa4g1060 390 SUPERFAMILY RING/U-box 306 374 - -
Psa4g1060 390 PANTHER - 269 383 - -
Psa4g1060 390 CDD RING-H2_RNF126_like 327 368 - -
Psa4g1060 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 374 IPR013083 -
Psa4g1060 390 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 269 383 - -
Psa4g1060 390 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1060 Psa-Chr4 77625101 77627384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1060 17 374 C3H Transcription Factor Family AT5G60820 34.080 7.71e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1060 - - mtr:MTR_4g110100 489.96