Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1059 ATGGCGACTTCTCCGCCAACATCCAGTAAACGCCCCAAATCCGAAGCAGAATCCAACGAAGAAAACGACAAGGAGCAGGATGATTGCTGCGGTATTTGCTACGTCGAACGCGGAGTTTCAATTCCAGGTGAAATCGATTCCTGCAACCACTATTTTTGCTTCGTTTGCATCATGGAATGGGCCAAACACGAATCTAGATGCCCAATCTGTCGCCAGAGATTCTCCAACGTTCGTAGACTCCCTAAGCTTGGCGTATTTTCTTCCTCTCGGGACGTTAAGGTCCCTCTCCGTGACCAGGTTTATCATCCTCATGGAAATATGACAAGTGGTCCTGTTGATTCTAATGTTGAACTCAAATGCTGTATTTGCTATGTTGCAAAAGATGAAAATCTTATAATTATATGCGATCTTTGCGATATGGCTTCACATGCTTATTGCGTTGGCCTGGGATACAACGTTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTGTTTCCCGGGAGACTAATGCTAATGATGGTTTAGACTTAGACCAACAAGCTCTTGAGTTAACAGCTGAGCCTGAGCCTGGTGTAACCGTCTTAGATATCGTGAGAGAAACAAGCAGCCAAGTGGCTAGAAGACCGATGATATCTTCCATTCGACGAAACCATTCTTTGTCTTCTGCTATTCCTTTAGCTGATAGAGCGAGTAGATCAGAAGGTAAAAAACCCGTGACAGCTGTGCAGCGTGCGCAATGTAATGTCCAGGTGCTTCGTGAAAATTGGGATTCTTTGAGAAGTGGTTCATTGAGGTTTGATAGGAAATCATTTCAATCGGGTGGCACAAGTAGTCAAAAACATGATTCTAGTTCTTTATCACGTGGTAAATTAGATGGTTCACACCCAATAGCTTCCACAGGCCGTCAACAATCCACAGTCCAAGGCGCCCAATCTAGTAACATGGTGAATGATGGTGACTTGAAATATGATGTTCACAAAGCTTGGCAAATGATGGATAGGGCAAAGACAATGAAACAGACTCCTAGACGAACTAGCAGAATTACAAAGGTAGTGGATGATGATCCCTCGTGTAGCGGTGCTAGAGAAAAATCATTTGCACCTCGTAGTTGCCCAGAATTGAAAAACCTACAGCCCAGAACATTAGACTTTAGGTGCACCAGAATGGAGGAGCAGTGTGGCTATTCAAGTCTTACAAAAAAATTGGAAAATCACTTGTCTCCGATGTTGGGAGAGAAAAGGAAAAGTAGGGTCTCATATCAGGAGAAGATACAGCATTTGAGGGACCATACTAGTACTACACATTCAGTAGGATGCAGGGAACGTCCATTGCTCAGTAAGGTCCATACTGGTACCCACAGTGCTCCCCGTGACGATGAAAGAAATTCCGAGAGGGAACAAAGGCAGTCTACTTACTTGGTAGTTTCAGTAGGTTCAGCATCCTCTAGTGGCAAATCTGACAGTGTGTTTTCCTCTAATAAGGATGTGAATAAAGAAAAGAGATTTGCTAAAGGCTTTGGGAATGAGATAACAAAAAATACTGAAGATGCAAAAACAGAGATCCAGTGTCTTGTTAAACTGAATCTGAAGTGCTTAACTAGAGATAAACAATTAGGCGTCGAAACTTTCAAGTTAGTTGCAAGGCAAGCCACACATACCATCTTGGCTGCTTGCCATTCCGAGCAGCACAGGTCTAATATATACTCCTCAAGCTCCGTATGCAGCCATACTGACCATATTACACAGTTACAGAAGTCCACTTTAATGCCCAATTGTTGCCGACAATGTTTTCACGTCTTTGTGAACGATGTTGTCAAATCCATCATGTTGGAAAAAGTGGGCTGTTGTTCTTGA 1854 0.432 MATSPPTSSKRPKSEAESNEENDKEQDDCCGICYVERGVSIPGEIDSCNHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPKLGVFSSSRDVKVPLRDQVYHPHGNMTSGPVDSNVELKCCICYVAKDENLIIICDLCDMASHAYCVGLGYNVPEGDWFCHDCAVSRETNANDGLDLDQQALELTAEPEPGVTVLDIVRETSSQVARRPMISSIRRNHSLSSAIPLADRASRSEGKKPVTAVQRAQCNVQVLRENWDSLRSGSLRFDRKSFQSGGTSSQKHDSSSLSRGKLDGSHPIASTGRQQSTVQGAQSSNMVNDGDLKYDVHKAWQMMDRAKTMKQTPRRTSRITKVVDDDPSCSGAREKSFAPRSCPELKNLQPRTLDFRCTRMEEQCGYSSLTKKLENHLSPMLGEKRKSRVSYQEKIQHLRDHTSTTHSVGCRERPLLSKVHTGTHSAPRDDERNSEREQRQSTYLVVSVGSASSSGKSDSVFSSNKDVNKEKRFAKGFGNEITKNTEDAKTEIQCLVKLNLKCLTRDKQLGVETFKLVARQATHTILAACHSEQHRSNIYSSSSVCSHTDHITQLQKSTLMPNCCRQCFHVFVNDVVKSIMLEKVGCCS* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1059 617 MobiDBLite consensus disorder prediction 426 479 - -
Psa4g1059 617 SMART PHD_3 119 164 IPR001965 -
Psa4g1059 617 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 80 IPR013083 -
Psa4g1059 617 SUPERFAMILY FYVE/PHD zinc finger 111 165 IPR011011 -
Psa4g1059 617 MobiDBLite consensus disorder prediction 452 467 - -
Psa4g1059 617 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 175 IPR013083 -
Psa4g1059 617 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Psa4g1059 617 MobiDBLite consensus disorder prediction 297 313 - -
Psa4g1059 617 MobiDBLite consensus disorder prediction 270 284 - -
Psa4g1059 617 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Psa4g1059 617 Pfam Ring finger domain 29 71 IPR001841 -
Psa4g1059 617 MobiDBLite consensus disorder prediction 335 364 - -
Psa4g1059 617 SMART ring_2 30 70 IPR001841 -
Psa4g1059 617 MobiDBLite consensus disorder prediction 270 313 - -
Psa4g1059 617 Pfam PHD-finger 120 164 IPR019787 -
Psa4g1059 617 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 10 614 - -
Psa4g1059 617 MobiDBLite consensus disorder prediction 335 360 - -
Psa4g1059 617 SUPERFAMILY RING/U-box 20 83 - -
Psa4g1059 617 MobiDBLite consensus disorder prediction 1 22 - -
Psa4g1059 617 PANTHER F18C1.6 PROTEIN 10 614 - -
Psa4g1059 617 ProSiteProfiles Zinc finger PHD-type profile. 117 166 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1059 Psa-Chr4 77566277 77571086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1059 63 183 C2H2 Transcription Factor Family AT3G01460 27.049 7.81e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa4g1059 PHD 3.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1059 - - gmx:100808541 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1059 4 77566277 77571086 Psa4g1059 4 77566277 77571086 ECH