Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1047 ATGGAGCTTCCTCAATCTCGTCCATGTGGAGCCGAAGAAGCCGGAAGGAAACCGACGCATGATTTTCTGTCGCTATACAGTAACTCAACTGCCGAACAAGATCCAAGGTCTTCTGCTCAAGCAAGTTACCTCAAGACCCATGATTTCTTGCGGCCACTAGAGCAGGTAGAAACAAAATCCAGTGCCAAAGAAGAAGCCACAGATGAAATCTCATCGGCGGTTCAGAAGCAACCGCCTTTACCCACACCAGCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGTACTTACACTATTAGCCACATTAATTCCTACGTCAATAATACTCAAAGGGTTCCAAAGCCAGAATCATCACTTTTCACTGTGCATCAAGCAACTAGTGCGGATAGAAACGATGACTCAAACTGTAGTTCACATACTTCAAGCGGTTTCACATTATGGGAAGAGTCTGAGATAAAAAAGGGAAAGACAGAAAAGGAGAATAATGTTGGAGAGAAATCCATTATAGGAGTGGCAGATACTGCTGCTAAGCTGGGGCCGTGGACAATGACGGAGCAGATATCTCAATCCTTTTCTAACAACCGTCATGGCAGCTTCAACTCTCGCTCTTCATCTCAGACAGCTGGACAGAAGAACCAAAGTTTTATGGAGATGATGAAATCTGCACAGGGTTGTCCCCAGGATGAAGAGCTAGAAAATGAAGGAACGTTTTTTCTCAAGAGAGAATCCTTGGATACTCAAAGAGGAGAACTAAGGGTGAGAGTGGATGGGAAGAGTATTGATCAAAAGCCAAACACGCCGAGATCAAAACATTCTGCAACAGAGCAGAGGAGAAGAAGCAAAATTAATGACAGATTTCAGATGCTACGAGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTCTGTTAGAGGTCATTGAGTATATTCACTTTTTACAAGAGAAGGTACATAAGTATGAAGGTTCATTCCAAGGTTGGAATAACGAGCCAGAAAAATTGATACCATGGAGAAATAATGATAGGCCAGCAGAAACTTTTCAACCCCGCGGCACAAACAGCGGGTCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGAGGAGAAAAATATACCCATCTCCCCAACAATTCATGCCTCTACCCCTAATGTAGAATCTGGCTTGAGCACAACAGCTGCCTTCAAGACAATAGATCATCAGTCTGGAATAATGAACAAGACTTTTCCAATTCCTACTTCTTCCCAACCAAATATCTTCCCTTCAACCCAAGCCGGTGGTTCAGGTGGAGCAGTATCTCTACTCAGACATAGATTAGCATCTGATGCAGAGAACATCATTTATCAACCTTCAGTAGAATCTCAGACTATGACTTCTACCAATGAAAAGCTGAAAGAGAAAGAGCTGACTATTGAAGGAGGTGCCATTAGTATATCAAGTGTGTACTCACAAGGGTTATTGGATACACTTACACACGCATTGCAGACTTCGGGCGTGGATTTGTCACAAGCTAGCATTTCAGTGCAAATTGAACTTGGCAAGCAAGCAAAAATCACACCAAACGTACCAATATCAATGTGTGTTTCTAAGGATGATGAAGATCCTTCAAAAAATCAAAGAAAGATACGTTCCAGACTCGTCGGCTCTGAGAAGTCTGATCAAGCAGTAAAGAAACTAAAGACGTGCAAAAGTTAA 1707 0.4253 MELPQSRPCGAEEAGRKPTHDFLSLYSNSTAEQDPRSSAQASYLKTHDFLRPLEQVETKSSAKEEATDEISSAVQKQPPLPTPASVEHLLPGGIGTYTISHINSYVNNTQRVPKPESSLFTVHQATSADRNDDSNCSSHTSSGFTLWEESEIKKGKTEKENNVGEKSIIGVADTAAKLGPWTMTEQISQSFSNNRHGSFNSRSSSQTAGQKNQSFMEMMKSAQGCPQDEELENEGTFFLKRESLDTQRGELRVRVDGKSIDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLIPWRNNDRPAETFQPRGTNSGSNPSPTLLFASKIEEKNIPISPTIHASTPNVESGLSTTAAFKTIDHQSGIMNKTFPIPTSSQPNIFPSTQAGGSGGAVSLLRHRLASDAENIIYQPSVESQTMTSTNEKLKEKELTIEGGAISISSVYSQGLLDTLTHALQTSGVDLSQASISVQIELGKQAKITPNVPISMCVSKDDEDPSKNQRKIRSRLVGSEKSDQAVKKLKTCKS* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1047 568 MobiDBLite consensus disorder prediction 22 44 - -
Psa4g1047 568 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 316 IPR011598 GO:0046983
Psa4g1047 568 PANTHER TRANSCRIPTION FACTOR BIM1 1 565 - -
Psa4g1047 568 MobiDBLite consensus disorder prediction 50 70 - -
Psa4g1047 568 MobiDBLite consensus disorder prediction 534 568 - -
Psa4g1047 568 CDD bHLH_AtBIM_like 265 341 - -
Psa4g1047 568 Pfam Helix-loop-helix DNA-binding domain 268 317 IPR011598 GO:0046983
Psa4g1047 568 SMART finulus 272 322 IPR011598 GO:0046983
Psa4g1047 568 MobiDBLite consensus disorder prediction 249 281 - -
Psa4g1047 568 MobiDBLite consensus disorder prediction 191 212 - -
Psa4g1047 568 Gene3D - 264 337 IPR036638 GO:0046983
Psa4g1047 568 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 336 IPR036638 GO:0046983
Psa4g1047 568 MobiDBLite consensus disorder prediction 532 568 - -
Psa4g1047 568 MobiDBLite consensus disorder prediction 1 81 - -
Psa4g1047 568 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 565 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1047 Psa-Chr4 77236290 77245081 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1047 1 520 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 49.353 1.02e-129 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g1047 HLH 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1047 - - gmx:100808016 817.764