Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1027 ATGGCACAAGACGCTGTTTCCGGCGCTGAATCGCCTCACCGTCGTCAAGGTTTACTCCGAGATCAAGTTCAATTAGTTAAAAGAAAAGACTCTTCCGATCGCTACGAGATTGTTCCAATTCAAGATTCTTTATCCTTTGAGAAAGGATTCTTCATTGTTATTCGCGCGTGTCAGTTATTGGCTCAAAACAATGATGGAATTGTGTTAGTAGGAGTTGCAGGTCCTTCTGGAGCGGGGAAAACTGTTTTTACCGATAAGGTTTTCAGTTTCATGCCGAGTATAGCTGTTATAAGCATGGATAATTATAATGATGCTAGTCGAATCATTGATGGAAACTTTGATGACCCTCGATTGACGGATTATGATACCTTGCTAAAAAATATACAGGATCTTAAATCAGGAAAGCCTGCTCAGGTTCCGATATACGATTTCAAGTCTAGTTCTCGCATCGGATACAGGACTATTGAAGTCCCTAGCTCCCGTATTGTAATCATTGAAGGCATCTACGCCTTAAGTGAAAAATTACGACCTCTGCTTGATCTTCGTGTTTCTGTCACTGGCGGAGTTCATTTTGACCTTGTCAAGCGTGTTCTGCGGGACATACAACGAGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCCATGTATAAAGCTTTTATAGAGCCAGATCTCCAAACAGCGCATATAAAAATTATTAACAAGTTTAATCCATTCACTGGATTCCAGAATCCCACTTACATATTGAAGTCAGCAAAAGTTGTGACAGTGGATCAAATCAAGGCAGTTATTGCTGCAGAGTATACTGAAACCAAAGAGGAAACATATGACATTTATCTTCTACCCCCCGGAGACGACCCTGAAGCATGTCAATCCTATTTGAGAATGAGAAACCGGGATGGAAAATACAATCTTATGTTTGAGGAATGGGTTACGGATAGTCCATTCATTATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGTCTGCTTGGAGGGCTGATGGCCTTGGGGTATACAATTGCAGCAATCCTGAAAAGAAGCAGCCATGTTTTTCATGACAATAAAGTGTCTATAAAAACGGATTGGCTAGAACAACTTAATCGCCAATATGTCCAGGTGCAAGGGAAAGATAGGAACTATGTTAAATTTGTAGCGCAGAAACTGGGTCTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAGCTAGAAAAGCTTGTAAATGATGTGATGGCACTGCCAGATGATCTGAAGAACAAACTAAGCATAGACGATGATTCGGTTTCAAGCCCCAAAGAAGCACTTTCTAGAGCTTCTGCTGATAGGAGAATGAAGTATCTTAATCGTGATATTTCACAGTCATATTCAAATCGAAGAGACAAGATTCTACCAAAGTTGACTAAACTTGCTATAAATAACAGAAGTTTTAATGCGAGAGGTCTAGAATCACCTGCTCCCATGGCCAACCAAGGAGTTATCATTCAACTTTCCGATCAAATTTCCACCCTAAATGAAAGAATGGACGAGTTCACCTCCCGTATTGAAGAGCTGAATTCAAACTTCGATGTTAAAAAAGTTTCAGCCAGTCAACAAAATATGGCTTTACAAGCTGAGACCTGCAATGGCTCTGGCCCCATTTCTCACTTTGTTACTGGATTAGGCAATGGTTCATTGACTGGATCATTGCTTCCTAATTCTCTGTCATCCTCTCAGTTGGTTAGAGAGTCTCCGCTAATGGAAGAGGTATTACTTGTTGCCCGAGGACAACGTCAAATCATGCATCAACTAGACACACTGAGCAATCTTATGCAGGAATACTTTGGAGAAAAATCGCGGCTGGGAAGAACAGACCAGGTAGGCAAAAAACGTGAAGTTGAATCCTTTGCGATCCCTCTGGTTCTGACTTTAGCCGTTGGTGCTGTTGGCGTGTTCTTGTTCAAGAGTTTGACATCTAAAAAATAG 1989 0.4103 MAQDAVSGAESPHRRQGLLRDQVQLVKRKDSSDRYEIVPIQDSLSFEKGFFIVIRACQLLAQNNDGIVLVGVAGPSGAGKTVFTDKVFSFMPSIAVISMDNYNDASRIIDGNFDDPRLTDYDTLLKNIQDLKSGKPAQVPIYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSAKVVTVDQIKAVIAAEYTETKEETYDIYLLPPGDDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDNKVSIKTDWLEQLNRQYVQVQGKDRNYVKFVAQKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKNKLSIDDDSVSSPKEALSRASADRRMKYLNRDISQSYSNRRDKILPKLTKLAINNRSFNARGLESPAPMANQGVIIQLSDQISTLNERMDEFTSRIEELNSNFDVKKVSASQQNMALQAETCNGSGPISHFVTGLGNGSLTGSLLPNSLSSSQLVRESPLMEEVLLVARGQRQIMHQLDTLSNLMQEYFGEKSRLGRTDQVGKKREVESFAIPLVLTLAVGAVGVFLFKSLTSKK* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1027 662 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 6 650 - -
Psa4g1027 662 Gene3D - 68 249 IPR027417 -
Psa4g1027 662 PRINTS Uridine kinase signature 67 84 - -
Psa4g1027 662 PRINTS Uridine kinase signature 134 149 - -
Psa4g1027 662 PRINTS Uridine kinase signature 190 200 - -
Psa4g1027 662 PRINTS Uridine kinase signature 226 239 - -
Psa4g1027 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 238 IPR027417 -
Psa4g1027 662 CDD UMPK_like 69 241 - -
Psa4g1027 662 PANTHER URIDINE KINASE 6 650 - -
Psa4g1027 662 Pfam Phosphoribulokinase / Uridine kinase family 70 238 IPR006083 GO:0005524|GO:0016301
Psa4g1027 662 ProSiteProfiles CYTH domain profile. 250 412 IPR023577 -
Psa4g1027 662 Coils Coil 502 529 - -
Psa4g1027 662 Gene3D - 255 410 - -
Psa4g1027 662 Pfam CYTH domain 274 406 IPR023577 -
Psa4g1027 662 SUPERFAMILY CYTH-like phosphatases 262 409 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1027 Psa-Chr4 76231337 76237935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1027 69 238 PRT Gene Family AT5G40870 28.492 1.46e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1027 K00876 - gmx:100803122 1107.05