Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1021 ATGGAACCCATGGATATCGTTGGCAAATCAAAGGAAGACGCTTCGCTTCCCAAAGCAACAATGACAAAGATAATTAAAGAGATGTTACCTCCAGACGTACGAGTTGCAAGAGACGCCCAAGACTTATTGATTGAGTGTTGTGTAGAGTTTATAAATCTCATCTCATCTGAGTCAAATGAAGTCTGTAGTAGAGAGGATAAACGGACTATTGCACCTGAGCACGTATTGAAGGCTCTACAGGTGCTTGGATTTGCCGATTACGTGGAAGAAGTTTATGCAGCATATGAACAACACAAATTGGAGACCATGCAGGATTCCTTAAAAGGCGGTAAATGGAGCAATGGAGCTGAAATGACCGAGGAAGAAGCATTAGCCGAACAACAAAGGATGTTTGCAGAGGCACGCGCTAGGATGAATGGTGGGGTCATTGCTTCTAAGCAGCCAGATGGTGACCAAAGTTTAGATAGCTAA 471 0.4352 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALQVLGFADYVEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGVIASKQPDGDQSLDS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1021 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 - -
Psa4g1021 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Psa4g1021 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Psa4g1021 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Psa4g1021 156 Gene3D Histone, subunit A 4 141 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1021 Psa-Chr4 76090942 76094455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1021 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 82.468 2.64e-93 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa4g1021 CBFD_NFYB_HMF 5.9e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1021 K21751 - gmx:100807912 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1021 4 76090942 76094455 Psa4g1021 4 76090942 76094455 ECH