Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1016 ATGCATAATACTGTTTGGTGCAGTACTGTCCATCTCAAACTTCCAGATATGTATTCATCAAATAGTTCCCTCAATGGAAATAACCTAACATTTTCCTCTAATTCACCTTTTTGTTCCTTTGAAAGCAACTCAACTTCATCAAAAGATGATCACAACATTCATTCCTCTTTTCCTCTCACTCCTAATTTCTCTTTCTTTCAATTTCCATATTCTGATCCATTTGAAGACAACCAACTTTTCATCCAACAGCAACATGATGTTGATTTCCAGCTTCATCATCCGCCTATAGTGATGAATAACAACAATAGTGCTCCTGATCACCAGGATCAGGCTTCGAAGAATTCGATAACCGACGCCACCAACAATATCGTTACTAGTCTTGTTCCTGCAGAAGCTGCTTCTGGTAAAGGCAAAACTGTAGTGGTTCAGCAGATCCAAAGGAAAAGATCTAGCAAGAGGGATCGACACAGCAAGATAAAAACGGCGAAAGGACTAAGGGATCGGAGAATGAGATTGTCGCTGGAAGTTGCAAAGAGGTTTTTCGGTCTTCAAGATATGTTAGGATTTGAGAAAGCAAGCAAAACTGTGGACTGGTTACTCAACCAATCGAAAGACGGAATCAAACAACTTGCAGGGGAAAAGAATATTCACTTTCCTAGTAAGAGTACATCTTCAACTTCTGAATGTGAAGGAGTTTCAAGCTTGGAGTACAACGAAGTTGGAAATCAAGAACAAGAAAAAGTGGTTATGAAGAAAAGAAGAAAAGGTACTAATAAGGTTTGTAGAAGGAGTGCATTCAATTCCATTGGTAGAGAAAAGGCAAGAGAAAGAGCAAGAGAAAGGACAAGAGAAAAAATGGAAGCTAGAACTAGAACATCACTAGTTGATGAATCAAACTCAAAGCAATGCAATGAAAGAAGAACAAAAACTAACCTCACTTGGAACCCCTTTGAAAGTGTGGTAGAATCTGCAGGTACACAAACTGTGAATTATCATCCTTCATTTGATCATGAGAAGCTGATTAATAATGAAGTAGAAGTTGAAAGAATCTCTCAAAAAGCAAAGGAACATGGTTCACATTCACATTCACATGAAGATCATAATTCTTTGTTCAATATGAACAAATGGAGTCCAACAATGATGTTCAATTCTCTCAATAACTTTCAAGAACATCAATTTGAACAATTTCACGAGTCCTTGGAAAAACCTTGGGAAGGCTACAATAACAACAACAACCATTTCTAA 1245 0.3743 MHNTVWCSTVHLKLPDMYSSNSSLNGNNLTFSSNSPFCSFESNSTSSKDDHNIHSSFPLTPNFSFFQFPYSDPFEDNQLFIQQQHDVDFQLHHPPIVMNNNNSAPDHQDQASKNSITDATNNIVTSLVPAEAASGKGKTVVVQQIQRKRSSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKDGIKQLAGEKNIHFPSKSTSSTSECEGVSSLEYNEVGNQEQEKVVMKKRRKGTNKVCRRSAFNSIGREKARERARERTREKMEARTRTSLVDESNSKQCNERRTKTNLTWNPFESVVESAGTQTVNYHPSFDHEKLINNEVEVERISQKAKEHGSHSHSHEDHNSLFNMNKWSPTMMFNSLNNFQEHQFEQFHESLEKPWEGYNNNNNHF* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1016 414 MobiDBLite consensus disorder prediction 271 304 - -
Psa4g1016 414 ProSiteProfiles TCP domain profile. 152 210 IPR017887 -
Psa4g1016 414 ProSiteProfiles R domain profile. 268 285 IPR017888 -
Psa4g1016 414 PANTHER TRANSCRIPTION FACTOR TCP18 64 384 - -
Psa4g1016 414 Coils Coil 271 291 - -
Psa4g1016 414 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 64 384 IPR005333 GO:0003700
Psa4g1016 414 Pfam TCP family transcription factor 151 288 IPR017887 -
Psa4g1016 414 MobiDBLite consensus disorder prediction 271 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1016 Psa-Chr4 75715015 75717959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1016 148 286 TCP Transcription Factor Family AT1G67260 39.610 1.64e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa4g1016 TCP 6.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1016 - - gmx:100803669 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1415 1 96398759 96401196 Psa4g1016 4 75715015 75717959 ECH
Psa3g4345 3 408066752 408068730 Psa4g1016 4 75715015 75717959 ECH
Psa4g1016 4 75715015 75717959 Psa4g1016 4 75715015 75717959 ECH