Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1011 ATGAGCTGGAGTAGGGTGTTGAAATCAGCGCAGGCACTCGCCGCCCACACTTTTCTCGTCTCTTTCACTCTCTTGCTCCTTCTCAAGCTTGATCATCACATCTCTTCCTCTTGGTGGATGATTTTTTCTCCTCTTTGGATGTTCCATGGCGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCCTCAGCTCCGCGTAATCGACATTGGGCGCCGTGTCATGCCGTTGTCGCAACGCCATTGCTTATTGCGTTTGAATTGCTCCTTTGTATATATCTCGAGAGCTTATATGTTCGTGGCTTTGCAGCAGTAGATCTGAAGATTGTGTTCCTTCCTTTATTAACATTTGAAATCATTATTCTCATTGACAATTTCAGAATGTGTAGAGCTCTAATGCCAGGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAAACTCTTCCTCACTTCTGGGTTGCCATCTCTATGGTTTTCTTCATTACTGCTACCGTTTTCACACTCCTAAAACTGAACGGTAGTGTAGCTTCTCTCGGTTGGTGGGACTTATTTATTAACTTCAGTATTGCCGAGTGCTTTGCGTTTCTTGTATGTACAAAGTGGTCGAATCCTGTCATTCATAGAAGTTCCAGAGAACCGAGTTCTTCTACTACTACTACTACAGTTAGATATCTTGACTTGAACAGTGGTTTAATGGTTTCTTCAGAAGGAGATCAACGGCAGGCGAGAATATGTAGCCTGCAAGACATAGGTGGTCATTTCATGAAAGTGCCGATTGTTGTATTTCAGGTTCTTCTCTGCATGCATTTAGAGGGAACAACTGCATTTGCTGCAAATTTATCTCTTGCCGTTCTTTTTTCTCCCCTTTTTGTACTGCAAGGTGTTGGCGTGCTGTTATCTGCATCTAAATTTGTGGAGAAACTCGTGCTTCTTCTACGAAGCGGAGCTGGTGGAGGACTTTATTTTAGATTCTCTTCAAGAGCTTACGATTGCTTGGGGTTCTTGCACCATGGTTCTCGATTATTAGGCTGGTGGTCAATCGATGAAGGAAGTCGGGAAGAACAGGCCCGATTGTACCATGAGGGAGCGTCTGGGTATAATACATTCAATGGTTACCCTCCTGAGATTGTTAAGAAAATGCCTAAAAGGGATCTTGCCGAGGAGGTGTGGAGACTCCAGGCTGCTCTTGGCGAGCAGACGGAAATTACAAAATACAGCCAACAGGAATATGAAAGACTTAAAAATGAGAAAGTGCTGTGCCGAATTTGTTTTGAAGGAGAGATAACTGTCGTGTTGCTCCCATGTAGGCACCGCGTCCTTTGCAACTCATGCTCGGAGAAGTGTAAGACGTGCCCGATGTGCCGCAACTATATCGCAGAGCGCTTGCCCGTATATGATGTCTAG 1404 0.448 MSWSRVLKSAQALAAHTFLVSFTLLLLLKLDHHISSSWWMIFSPLWMFHGVVARGRFSLPAPSAPRNRHWAPCHAVVATPLLIAFELLLCIYLESLYVRGFAAVDLKIVFLPLLTFEIIILIDNFRMCRALMPGDEESMSDEAIWETLPHFWVAISMVFFITATVFTLLKLNGSVASLGWWDLFINFSIAECFAFLVCTKWSNPVIHRSSREPSSSTTTTTVRYLDLNSGLMVSSEGDQRQARICSLQDIGGHFMKVPIVVFQVLLCMHLEGTTAFAANLSLAVLFSPLFVLQGVGVLLSASKFVEKLVLLLRSGAGGGLYFRFSSRAYDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFNGYPPEIVKKMPKRDLAEEVWRLQAALGEQTEITKYSQQEYERLKNEKVLCRICFEGEITVVLLPCRHRVLCNSCSEKCKTCPMCRNYIAERLPVYDV* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1011 467 SUPERFAMILY RING/U-box 412 462 - -
Psa4g1011 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 459 - -
Psa4g1011 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 465 IPR013083 -
Psa4g1011 467 SMART ring_2 420 454 IPR001841 -
Psa4g1011 467 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 467 - -
Psa4g1011 467 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
Psa4g1011 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Psa4g1011 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1011 Psa-Chr4 75435804 75440015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1011 1 467 C3H Transcription Factor Family AT1G73950 71.949 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1011 - - gmx:100791390 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1011 4 75435804 75440015 Psa4g1011 4 75435804 75440015 ECH