Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1010 ATGGAAGAAGTGAAACAACATTATCAAGTATTGGTAGATGATGTTAGTGCAATTGAGGCAGGTCATGTTTCATTTCCAAATTATGCTAATGAATTAGAAACTAGTTCGAATAAAGATTCTTCTAAGTCCACCACAAGTTTGGATAAGAGATCAAGTTGTAATTTTGGTAGTGGGTTTTCTGGTTTGGGACATGACTCCACCCACCATAGTAGTGGGAAAGGTGGATTGTCAAGGTCTTCATCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAAGAAGAGCATAGGCTGTTTTTACTTGGTCTAGACAAATTTGGAAAAGGAGATTGGAGGAGTATTTCAAGGAACTTTGTGATATCAAGGACACCAACACAAGTGGCAAGTCATGCACAAAAGTATTTCATAAGGTTGAATTCAATGAATAGAGATAGAAGAAGGTCTAGTATTCATGATATTACTAGTGTTAACAATGGAGATGTAGCTAGTAATCATCAAGCACCAATAACAGGGCAACATGGTAACACAATTCCTTCAAATACAATGGGTTTAGGACAATCAATGAAGCATAGAGTTCATCCTCATCACCCTAGTGCTGGTTTAGGAATGTATGGAGCACCAGTTGGACATCCTGTTGTTGCTCCTCCTGCTCATATGGCTTCTGCTGTTGGGACTCCGGTTATGCTTCCTCATCATCCTCATCATCATCCACCTTATGTTGTTCCTCTTGCTTACCCTATGGCACCTCCACCAATGCACCAATAA 768 0.3971 MEEVKQHYQVLVDDVSAIEAGHVSFPNYANELETSSNKDSSKSTTSLDKRSSCNFGSGFSGLGHDSTHHSSGKGGLSRSSSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNHQAPITGQHGNTIPSNTMGLGQSMKHRVHPHHPSAGLGMYGAPVGHPVVAPPAHMASAVGTPVMLPHHPHHHPPYVVPLAYPMAPPPMHQ* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1010 255 SUPERFAMILY Homeodomain-like 86 141 IPR009057 -
Psa4g1010 255 PANTHER TRANSCRIPTION FACTOR KUA1 1 254 - -
Psa4g1010 255 ProSiteProfiles SANT domain profile. 92 140 IPR017884 -
Psa4g1010 255 MobiDBLite consensus disorder prediction 28 49 - -
Psa4g1010 255 MobiDBLite consensus disorder prediction 64 90 - -
Psa4g1010 255 ProSiteProfiles Myb-like domain profile. 84 136 IPR001005 -
Psa4g1010 255 CDD SANT 91 136 IPR001005 -
Psa4g1010 255 PANTHER TRANSCRIPTION FACTOR MYBS1 1 254 - -
Psa4g1010 255 SMART sant 88 138 IPR001005 -
Psa4g1010 255 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 88 138 IPR006447 GO:0003677
Psa4g1010 255 MobiDBLite consensus disorder prediction 64 79 - -
Psa4g1010 255 Gene3D - 90 142 - -
Psa4g1010 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 140 IPR017930 -
Psa4g1010 255 Pfam Myb-like DNA-binding domain 91 136 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1010 Psa-Chr4 75413165 75414713 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa4g1010 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1010 - - gmx:778049 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1010 4 75413165 75414713 Psa4g1010 4 75413165 75414713 ECH