Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0984 ATGGCATCACCATCTGAACTAGGCTTGGATTGCAAGCCACATAGCTACTCCATGTTACTCAAATCGGTTGGAGAACAAAGTGATCAAACCTACAAACTCGAAGAGTTTCTTTCTCGTTTGGAAGAAGAACGTCTCAAGATTGATGCGTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTTCTCACAAACGCTATGGAGGCATCGAAGCAACAACTTCAAGCTTACAAAGTGAGTCAAGGAGTTACAAAGCCGATTCTAGAAGAATTCATACCGGTAAAGGAAGTAACATCATCAGAAACCATGGAAAAGACAACAAATAATAATGTATGTGATAAAGCAAATTGGATGACAAGTGCTCAACTATGGAGTCAAACGACTGAAGCAGCAAAACAACAAAATTCCGCAAAAGAAACCACCGAAAGCAACAATATTGGATTCAACATTAGTCCGAAACATAGAAACGGTGGAGCCTTTTTACCATTCTCAAAAGAAAGAAACAACTCATCATGCCAAAATCAAGGTCTTCCCGAACTAGCACTTGCCTCTAACCAGAAAGAGGTTGATGACAAGAAACACGTTGCAGACGAAAAAGGAGAGAAGAGAGAAAACACCGAAGAAAAAGGGAGTCCAATAGCATCATCACATACTCAAACAACAAGCAACAATTCAAACCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCTGACTTGCACCGCAGATTCGTTAATGCTCTTCAAATGCTCGGTGGATCTCAAGTGGCAACACCAAAACAGATAAGGGAATTGATGAAAGTGGATGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTACACACAAGAAGACCAAGCCTAAGTGCACAAACAGGTGCACCACCAGCACAGTTAGTTGTTTTAGGAGGAATATGGGTCCCACCGGAATACGCCACGGCGCATTCAGGAGGAGCAACTACTCTCTACGGTGGACATCCTACTTCTCATCATGTGACTCTCCCGCACTACTGTACTGCACCTGGTCAGGAGTATTACACTACTGTGCCGCCGCAGCAGCATCAGCAGCTACTTCCGCCGCCTCACCACATGCACCATGTTTACAAGGCGACACCGCACGGTCAGGGCTCGCCGGAGACGGGTGGAGATGGGCTGGAGAGTATTGAGAATGGGAAGTCGGAGAGTGGTAGCTGGAAAGAAGGGAGTTCTGAGAATGAAGGAGAGAGGAAAGGGTTTGTTGAAGAGAGCAATGGGAGTCAAATCACTCTCAAATTTTAA 1284 0.4478 MASPSELGLDCKPHSYSMLLKSVGEQSDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASKQQLQAYKVSQGVTKPILEEFIPVKEVTSSETMEKTTNNNVCDKANWMTSAQLWSQTTEAAKQQNSAKETTESNNIGFNISPKHRNGGAFLPFSKERNNSSCQNQGLPELALASNQKEVDDKKHVADEKGEKRENTEEKGSPIASSHTQTTSNNSNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSLSAQTGAPPAQLVVLGGIWVPPEYATAHSGGATTLYGGHPTSHHVTLPHYCTAPGQEYYTTVPPQQHQQLLPPPHHMHHVYKATPHGQGSPETGGDGLESIENGKSESGSWKEGSSENEGERKGFVEESNGSQITLKF* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0984 427 MobiDBLite consensus disorder prediction 374 427 - -
Psa4g0984 427 SUPERFAMILY Homeodomain-like 226 287 IPR009057 -
Psa4g0984 427 Coils Coil 33 53 - -
Psa4g0984 427 MobiDBLite consensus disorder prediction 125 149 - -
Psa4g0984 427 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 229 284 IPR006447 GO:0003677
Psa4g0984 427 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 427 IPR044787 GO:0003700|GO:0006355
Psa4g0984 427 MobiDBLite consensus disorder prediction 209 229 - -
Psa4g0984 427 Gene3D - 228 286 - -
Psa4g0984 427 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 427 - -
Psa4g0984 427 MobiDBLite consensus disorder prediction 401 415 - -
Psa4g0984 427 MobiDBLite consensus disorder prediction 178 231 - -
Psa4g0984 427 Pfam Myb-like DNA-binding domain 231 282 IPR001005 -
Psa4g0984 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 286 IPR017930 -
Psa4g0984 427 MobiDBLite consensus disorder prediction 125 151 - -
Psa4g0984 427 MobiDBLite consensus disorder prediction 183 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0984 Psa-Chr4 73418597 73421149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0984 1 427 G2-like Transcription Factor Family AT2G03500 49.895 1.68e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa4g0984 Myb_DNA-binding 9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0984 - - gmx:100797015 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0984 4 73418597 73421149 Psa4g0984 4 73418597 73421149 ECH