Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0982 ATGACGCTGGACGATGATAGCTCCATATACGTTGGAGGTCTTCCCTACGACGCCACTGAAGATACCATTCGCACCGTCTTCAATTTGTATGGCGCCATCCTTGATGTCAAGATTATCAATGACCAACGTACTGTAGGCAAATGCTATTGTTTTGTTACTTTCACAAACCCTAGGTCAGCAATTGATGCCATCAACGACATGAATGGAAGAAGTATTAGTGGGCGTGTGGTCAAAGTTAATGGGGTGAAGTCTCGGGGTGGCGGCGGTGGTGGCGGCGGCGGCGGCAGTGGCGGTAGATCAAATTTTGGGAGAGAAAGAGAACGTTATTATCATCATAATGATGAAAGGAATGGAGATTGGGATCATGGCAGAGATAGAGAGATTCGAGATCAAGATTATGGTCGTGGCAGTGGCAGAGATCATATTCGAGAGCAAAATTATGATCATGGTATTGAGAAAGATGGATACAGGAGTAGAGGCAGTGACTGGAATCGACATGGTGATAGGTCTCGAGACCGTGAAAGGTCTCGGGATCGTGATAGATCACGAGATCATGACAGGGTTAGGGATAGGAGAGTCGAACATGTGCAAGATTATGGTGATCAAGCTAGAGAAAGCATGTTAGATGATGATTGGAATCGTGATGATGATAGGGCTGAAAATCAACAAGAAAACAACAGGGTACATGGTGGAGATGTGGATAGGGACCATAACTTGGACGTGGGCGCCGACAGAAAAATGGACAGGGTTAGTGACCATGATAAAAGTTTTGATGAACCTAAAAGAGAACCGTCAAGGAGAAACATAGATTTGAATGTGACAAATGAAAATAGTCCATCAGATTCTACCGATGACCACAATGAGGAGGCAGAAGATGAGTTAGAGCAGTCAATGCAAGAACTTGATAAACTAAAAAAGGAGGTTTCTAAACTGGAAGAGAGAGTGGAAGAAAGAAGACTTAATGTTACAGAGTTACAAAAACACTCTAAGAAACTGGAGGATGCGGTGATTACTGCAAAGAAACAATCTTTATATCGCCAAATGCAATTAACCAAGCTGCATGAATGTTTTCTGAAAGTGCAGGATTCGACAGAAAGACTTAAAACCAGTGAAAAAGAATTCCAGGCTCTAGTTGATTCAGTAATGTTTGAGAGTGATGGTGATGGGAGTCTTGGACAGCTTACAAATGGAAGTCTTGATGGTAAATAG 1209 0.4285 MTLDDDSSIYVGGLPYDATEDTIRTVFNLYGAILDVKIINDQRTVGKCYCFVTFTNPRSAIDAINDMNGRSISGRVVKVNGVKSRGGGGGGGGGGSGGRSNFGRERERYYHHNDERNGDWDHGRDREIRDQDYGRGSGRDHIREQNYDHGIEKDGYRSRGSDWNRHGDRSRDRERSRDRDRSRDHDRVRDRRVEHVQDYGDQARESMLDDDWNRDDDRAENQQENNRVHGGDVDRDHNLDVGADRKMDRVSDHDKSFDEPKREPSRRNIDLNVTNENSPSDSTDDHNEEAEDELEQSMQELDKLKKEVSKLEERVEERRLNVTELQKHSKKLEDAVITAKKQSLYRQMQLTKLHECFLKVQDSTERLKTSEKEFQALVDSVMFESDGDGSLGQLTNGSLDGK* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0982 402 CDD RRM_SF 9 80 - -
Psa4g0982 402 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 398 - -
Psa4g0982 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Psa4g0982 402 MobiDBLite consensus disorder prediction 81 102 - -
Psa4g0982 402 Coils Coil 280 342 - -
Psa4g0982 402 MobiDBLite consensus disorder prediction 131 269 - -
Psa4g0982 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Psa4g0982 402 SUPERFAMILY RNA-binding domain, RBD 4 107 IPR035979 GO:0003676
Psa4g0982 402 SMART rrm1_1 8 80 IPR000504 GO:0003723
Psa4g0982 402 Gene3D - 2 100 IPR012677 -
Psa4g0982 402 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 398 - -
Psa4g0982 402 MobiDBLite consensus disorder prediction 131 296 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0982 2 79 Eukaryotic Initiation Factors Gene Family AT1G71770 30.769 8.09e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0982 - - mtr:MTR_4g113150 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0982 4 73347212 73350061 Psa4g0982 4 73347212 73350061 ECH