Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0981 ATGAAGGTTGTTATAACTCCTGAAGTTAGCTCTAGAAAAACAAGAAAAGCTATCATAGGAGAGTTAGTGAAGGTTCATGGAAACACCGAGTTGGAAAAGAGACTCCCGGCTAATGATGGTGAGAAGAATCTTTACACTTCCGGTCGGCTTCCGTTTACACAGAAAGTGTTCGATATACTATTGAGTGAGGAAGATGAGACAACTTGTAGTACAAGGGAAAGAAAATTTGAGGTTCAAATCAAGTTTGCAGCTCAAGTTAGCATGCATCAGTTACATGAGCTTCTCAGTGGGAAAAAAGTGGATACTCCACAAGAAGCTCTTAATATCATTGACATTGTATTGAAGGAGTTTGCATCTCATAGCTATGTATCGTTTGGGAGGTTATCCTATTCTCCGGATTTAAGAAAATCGCATACGCTGAGTGGTGGATTGGAATCATGGCGCGGTTTCTATCAAAGTATAAAGGCTACTCAAATGGGATTATCACTAAATGTTGACATGTCATCCACGGCGTTTATAGAATCGCTCCCCGTGATTGACTATGTAGCTCAAATATTAGGAAAAGATGTGCACTTAAAGCCATTATCAGATGCAGATCGCGTCAAGATTAAGAGAGCCTTAAGAGGTGTGAAAGTAGAAATTACGTATAGAGGAAGTGTGAGAAGGAAGTACAAGATAACAGGATTGACATCACAACCTACAAGGGAACTCATTTTCCCTTTGGATAAGGAAATGAAAATGCAATCAGTAATTGATTACTTTCAAGAAAAGTATGAATATACAATCATGTATCCCCATTTACCTTGCCCTCAAGTAGGAAGTCAAGAGAAGTTGAACTATTTGCCTATGGAGGTGTGCAAGATTGTTGGAGGTCATAGATATTCAAAAGGGCTTAATGAGAAGCAAATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCACGCGGAAGAGAGGATGATATTCTACAGACAATTCATCAAAATGATTATAATTGTAATCCTTATGCAAAGGAGTTTGGTATCAGTGTAGACAACAAGCTTGCATCAGTCGAGGCTCGGGTTCTTCCTGCTCCTTGGTTGAAATATCATGACACTGGAAGAGAGAACAAAATCCTGCCACAAATTGGTCAGTGGAACATGATGAACAAGAAAGTTGTAAATGGAGGAAAAGTAACAAATTGGACTTGTATCAATTTCTCAAGAAATGTCCAAGAAAAATTAGCTAGTGCATTTTGCCAAAACATAGTTCAGGAATGCCAAATGTCAGGCTTGGAATTTAGTACGGAACCGGTGATTCCTGTATATTCAGCAAGACCAGATATGGTTAAGAAAGCCTTGGGGCATGTACATTTTGTTTCTCGAAACAAACTTGGTGGGAAAGAGCTAGAGTTGCTCATTGCTATTCTTCCTGACAAAAATGGCTCTCTCTATGCTCATCCCGACTCCGGAGAGGATGTTTGTCCATCTACTGCAGCCGTTGTAGCCTCTCAAGACTGGCCAGAGGTGAGCAAATATGCAGGATTGGTATGTGCTCAGACTCCTCGGGAGGAGCTTATTAAAGATCTTTTCAAATGTTCGAACGATCCACAGCATGGTATCGTTTATGGCGGCATGATCAGTTACGCGAGATGTACACGATCCGTCTCTGTAGTGCCTCCTGTGTATTATGCTCATCTGGCTGCTTACAGAGCTAGATTCTACATGGAACCTGATGTGCATGAAAATGCAAAATCACACGCTACAAGATCGAATATCGAGTCGGTTCGGCCGCTGCCAGCTCTAAAAGAGAATGTCAAGAATGTAATGTTTAACTGCTGA 1818 0.4087 MKVVITPEVSSRKTRKAIIGELVKVHGNTELEKRLPANDGEKNLYTSGRLPFTQKVFDILLSEEDETTCSTRERKFEVQIKFAAQVSMHQLHELLSGKKVDTPQEALNIIDIVLKEFASHSYVSFGRLSYSPDLRKSHTLSGGLESWRGFYQSIKATQMGLSLNVDMSSTAFIESLPVIDYVAQILGKDVHLKPLSDADRVKIKRALRGVKVEITYRGSVRRKYKITGLTSQPTRELIFPLDKEMKMQSVIDYFQEKYEYTIMYPHLPCPQVGSQEKLNYLPMEVCKIVGGHRYSKGLNEKQITSLLKVSCQRPRGREDDILQTIHQNDYNCNPYAKEFGISVDNKLASVEARVLPAPWLKYHDTGRENKILPQIGQWNMMNKKVVNGGKVTNWTCINFSRNVQEKLASAFCQNIVQECQMSGLEFSTEPVIPVYSARPDMVKKALGHVHFVSRNKLGGKELELLIAILPDKNGSLYAHPDSGEDVCPSTAAVVASQDWPEVSKYAGLVCAQTPREELIKDLFKCSNDPQHGIVYGGMISYARCTRSVSVVPPVYYAHLAAYRARFYMEPDVHENAKSHATRSNIESVRPLPALKENVKNVMFNC* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0981 605 Pfam Mid domain of argonaute 373 449 IPR032473 -
Psa4g0981 605 Gene3D paz domain 169 294 - -
Psa4g0981 605 CDD PAZ_argonaute_like 177 289 - -
Psa4g0981 605 SUPERFAMILY PAZ domain 170 331 IPR036085 GO:0005515
Psa4g0981 605 Gene3D - 528 604 IPR036397 GO:0003676
Psa4g0981 605 PANTHER PROTEIN ARGONAUTE 10 2 478 - -
Psa4g0981 605 PANTHER PROTEIN ARGONAUTE 10 540 604 - -
Psa4g0981 605 PANTHER PROTEIN ARGONAUTE 10 478 540 - -
Psa4g0981 605 Pfam N-terminal domain of argonaute 10 114 IPR032474 -
Psa4g0981 605 Gene3D - 478 527 IPR036397 GO:0003676
Psa4g0981 605 Pfam Argonaute linker 1 domain 131 174 IPR014811 -
Psa4g0981 605 ProSiteProfiles PAZ domain profile. 176 290 IPR003100 GO:0005515
Psa4g0981 605 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 478 540 - -
Psa4g0981 605 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 478 - -
Psa4g0981 605 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 540 604 - -
Psa4g0981 605 Pfam Argonaute linker 2 domain 317 362 IPR032472 -
Psa4g0981 605 SMART PAZ_2_a_3 180 312 IPR003100 GO:0005515
Psa4g0981 605 Gene3D - 354 477 - -
Psa4g0981 605 SMART DUF1785_2 123 175 IPR014811 -
Psa4g0981 605 Pfam PAZ domain 202 306 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0981 Psa-Chr4 73332567 73336556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0981 540 605 Eukaryotic Initiation Factors Gene Family AT5G43810 58.333 1.26e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0981 K11593 - gmx:100808457 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0981 4 73332567 73336556 Psa4g0981 4 73332567 73336556 ECH