Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0971 ATGAGTTATTGGGACAACATTCCAACGTTTAAGATGTCACCACCGCAATTCTCATCATCCAGCCGCGGCGATATCATTGAGGTCAGGCCTCAATTCCCGATGAGCAATCAAGGCTTTGAACACAATCAACGCTTTGAACCGCATTCTGCTTCGGATCATTTGAATTCCTTCAAAAGGCCAAGAATGTCTGACAACAGCCATTCCAATGCACTGATGGGCCCTCCACCAAACAGACCTACAGGCAACATTTTCTTCAAGACCCGCATTTGTACCAAGTTCGGGTTTGGTAGCTGTAGAAACGGTGAAACTTGTAGCTTTGCTCATGGGGTTGAAGAGATAAGGCAGCCACCACCAAACTGGCAGGAGCTTGTCCGTCCTCGCACTGAAGAACAGCCGCAATTGGGCGGGAATTGGAATGATGATCAGAAAATCATTCACAAAATGAAGCTTTGCAAGAAGTATTACAATGGTGAGGAATGTCCTTATGGTGATAAGTGTAACTTTCTTCATGAGGATCCTGCTAAGTTTAGGGACGACTCTTGGAAAACAAGAGAGTCCTCTGCAATCAGCATTGGTTTCCCAAAGTCTTTTGGGGATGGTTCTAATAGTTTGGAAAGCAATAGGGCTGGGACTAAGCCAGCAAGGGGTACTTGTTGGAAGACTAAGATGTGTCTCAAGTGGATGAATACCGGTAGCTGTCCCTTTCGCGATGGCTGTCACTTTGCTCATGGAGATGCAGAGTTACTAGTTCCCGGTGGAGGCATTGAAGCTGAAGCTGCAGTTGCAATGACAAATTCACCAAAAGCTGTCATTCCAACTTTACCAACAACAGCCTTGTCAGGTTCTGCCCATGATGCACTACCAGCAAGTGTACCTTCGGTAACGGAAGAGGAGAAGAAGATCAAGAAGGAATTACTCTGGAAGAAATTAAACAAGATGAACCATATTTATGGCGATTGGATTGATGATTTACCTCTTGATCGTCCTGATTTGTCAAGGGAGCCCTGA 1008 0.4544 MSYWDNIPTFKMSPPQFSSSSRGDIIEVRPQFPMSNQGFEHNQRFEPHSASDHLNSFKRPRMSDNSHSNALMGPPPNRPTGNIFFKTRICTKFGFGSCRNGETCSFAHGVEEIRQPPPNWQELVRPRTEEQPQLGGNWNDDQKIIHKMKLCKKYYNGEECPYGDKCNFLHEDPAKFRDDSWKTRESSAISIGFPKSFGDGSNSLESNRAGTKPARGTCWKTKMCLKWMNTGSCPFRDGCHFAHGDAELLVPGGGIEAEAAVAMTNSPKAVIPTLPTTALSGSAHDALPASVPSVTEEEKKIKKELLWKKLNKMNHIYGDWIDDLPLDRPDLSREP* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0971 335 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Psa4g0971 335 SMART c3hfinal6 218 245 IPR000571 GO:0046872
Psa4g0971 335 SMART c3hfinal6 145 172 IPR000571 GO:0046872
Psa4g0971 335 SUPERFAMILY CCCH zinc finger 218 248 IPR036855 GO:0046872
Psa4g0971 335 PANTHER CCCH ZINC FINGER/TIS11-RELATED 15 325 IPR045877 GO:0003729
Psa4g0971 335 Gene3D - 213 249 - -
Psa4g0971 335 Gene3D - 79 115 - -
Psa4g0971 335 Gene3D - 142 174 - -
Psa4g0971 335 ProSiteProfiles Zinc finger C3H1-type profile. 145 173 IPR000571 GO:0046872
Psa4g0971 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 219 244 IPR000571 GO:0046872
Psa4g0971 335 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 15 325 - -
Psa4g0971 335 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Psa4g0971 335 Pfam CCCH-type zinc finger 149 170 IPR041367 -
Psa4g0971 335 ProSiteProfiles Zinc finger C3H1-type profile. 219 246 IPR000571 GO:0046872
Psa4g0971 335 SUPERFAMILY CCCH zinc finger 145 172 IPR036855 GO:0046872
Psa4g0971 335 SUPERFAMILY CCCH zinc finger 83 115 IPR036855 GO:0046872
Psa4g0971 335 Pfam RNA-binding, Nab2-type zinc finger 90 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0971 Psa-Chr4 71581426 71586016 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0971 220 248 C3H Transcription Factor Family AT1G68200 58.621 9.08e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g0971 zf-CCCH 0.00023 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0971 - - gmx:100793865 377.096