Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0967 ATGAATCATCCAGAAAACATTCCAACATTCAAGATGTCACCACCGCAATTCTCATCATCAAGCAGCACCGATATCATTGATGTGACGCCGCCTCAATTCCCGATCAGCAACAATCCACGTTCAGCATCCGATGATGGTTCCCATTCCTTCCGAAGGTCAAGAGTTCCGGACAACAAGCAATCCAATGCACCAAACAACATTTTCTTCAAGACCCGTATTTGTACCAAGTTCGGGCTTGGTACCTGCAGAAACGGTGAGAATTGCACCTATGCTCATGGGGCTGATGAGATAAGGCAGCCCCCACCGAACTGGCAGGAGCTTTCCTCGTACCGAAGAGACAATCCTGCCAAGTTTAGGGACGACTCATGGAAAACAAGAGAGTCGTCAGCAATCAGCATTGAGACTTGTAATAATTTGGAAGGAAGTAGGGCTGGAAGTAAGCAGGAAAGGGGCACTTATTGGAAGACTAAGATCTGTATCAGGTGGAAAAATACCGGGAGCTGTCCCTTTGGTGATGGCTGTCACTTTGCTCATGGAGATGCAGAGTTACAAGTTCCTGGTGGAGGCATTGAAGCTGAAGCTGCAGTTGCCATAGCAAATTCAACAAAAGCTGTCATTCCAACCTTACCAACTATAGGTTCTTCAGCCAATAATGCACCTACATTACCGTTACCAGCAAGTGTATCTGCGATGACGGAAGAGGAGAAGAAGGCAAAGAAGGAATTACTTTGGAAAAAATTAAACAAGATCAACCGTATTTATGGCGATTGGATTGATGATTTATCTCCCGACTTGCCAAGTACGGCGGAGCCCTGA 816 0.4608 MNHPENIPTFKMSPPQFSSSSSTDIIDVTPPQFPISNNPRSASDDGSHSFRRSRVPDNKQSNAPNNIFFKTRICTKFGLGTCRNGENCTYAHGADEIRQPPPNWQELSSYRRDNPAKFRDDSWKTRESSAISIETCNNLEGSRAGSKQERGTYWKTKICIRWKNTGSCPFGDGCHFAHGDAELQVPGGGIEAEAAVAIANSTKAVIPTLPTIGSSANNAPTLPLPASVSAMTEEEKKAKKELLWKKLNKINRIYGDWIDDLSPDLPSTAEP* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0967 271 PANTHER CCCH ZINC FINGER/TIS11-RELATED 8 111 IPR045877 GO:0003729
Psa4g0967 271 PANTHER CCCH ZINC FINGER/TIS11-RELATED 119 262 IPR045877 GO:0003729
Psa4g0967 271 MobiDBLite consensus disorder prediction 1 62 - -
Psa4g0967 271 SUPERFAMILY CCCH zinc finger 66 99 IPR036855 GO:0046872
Psa4g0967 271 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
Psa4g0967 271 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Psa4g0967 271 SMART c3hfinal6 68 94 IPR000571 GO:0046872
Psa4g0967 271 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 69 93 IPR000571 GO:0046872
Psa4g0967 271 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 179 IPR000571 GO:0046872
Psa4g0967 271 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 119 262 - -
Psa4g0967 271 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 8 111 - -
Psa4g0967 271 SUPERFAMILY CCCH zinc finger 152 184 IPR036855 GO:0046872
Psa4g0967 271 ProSiteProfiles Zinc finger C3H1-type profile. 68 95 IPR000571 GO:0046872
Psa4g0967 271 MobiDBLite consensus disorder prediction 1 44 - -
Psa4g0967 271 Gene3D - 61 99 - -
Psa4g0967 271 Gene3D - 145 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0967 Psa-Chr4 71493827 71496254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0967 155 184 C3H Transcription Factor Family AT1G68200 56.667 1.93e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g0967 zf-CCCH 2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0967 - - mtr:MTR_4g113860 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0967 4 71493827 71496254 Psa4g0967 4 71493827 71496254 ECH