Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0966 ATGAATCATCCAGAAAACATTCCAACGTTCAAGATGTCACCACCTCAATTCTCATCATCAAGCAGCACCGATATCATTGACGTGACGCCTCAATTCCCGATCAGCAACAATCCACGTTCAGCATCCGATGATGGTTCCCATTCCTTCCGAAGGTCAAGAGTTCCGGACAACAAGCAATCCAATGCACCAAACAGACGAACCGGCAACATTTTCTTCAAGACCCGCATTTGTACCAAGTTTGGCTTTGGTAGTTGCAGAAATGGTGAGAACTGTACTTTTGCTCATGGGGCTGACGAGATAAGGCAGCCCCCACCAAACTGGCAGGAGCTTGTCGGTCCTCGTACCGAAGAACGGCTGCAGTTGGGCACGAATTGGAATGATGATGTGAAAATCATTCACAAGATGAAGCTGTGCAAGAAGTATTGCAATGGGGAGATATGTCCATATGGTGATAACTGTAACTTTCTTCACGAGAATCCTGCCAAGTTTAGGGACGACTCATGGAAAACAAGAGAGTCGTCAGCAATGGGAGATATGTCCATATGTAGGGCTGGAAGTAAGCCGGAAAGGGGCACTTATTGGAAGACTAAGATCTGTCTCAGGTGGAAAAATACCGGGAGCTGTCCCTTTGGCGATGGCTGTCACTTTGCTCATGGTGATGCAGAATTACAAGTTCCTGGTGGTGGCATTGAAGCGGAAGCTGCAGTTTCCTTGGCAAATTCAACAAAAGTTGTCATTCCAACTTTACCAACAGGTTCTTCAGCCAATAATGCACCTACATTACCAGCAAGTGTATCTGCGATGACGGAAGAGGAGAAGAAGGCAAAAAAGGAATTACTTTGGAAGAAATTAAACAAGATCAACCGTATTTATGACGATTGGATTGATGATATATCTCCCGACTTGCCAATTTTATCAATAGCCATGACTGACCCAGACAACATTCCAATCTTTAACATGTCACCACCGCAAGTCGCCTCATCATCCAACAGCGATATCAATGGAGTGAGGCCTCAATTCCCAATCAACACTTCGAACCATCTATGCTCATGGAAAGAAGAGTTAAGGCAGCCACCACCAAACTGGAAGGAGCTCCAACGGCTGCATTTGGGCGGGAATAGGGATACTTCTAAGTTTATGAACGACATTTTCTTCAAGACCCATCTTTGTGCTAACTTCGTGTTTCGTAGCTGCAGAAACGGTGAAAATTGTAGCTATGCTCATGGGGAAGAAGAGTTAAGGCAGTCACCACCAAACTGGCAGGAGCTCAAACGGCAGCAGTTGGGCGGGAATAGGGATACTGCTAAGTTTATGAACGATTCTTGGAAAACAAGAGAGTCCTCTGCAATCACCCTTAGAACTATTGGTAATAATTTGGAAGGCAATAAGACTGGGACCAAGCATGCCCGAAGCCGCCCCTTAGGTGATGACTGTAACTATGCTCATGGAGATGCAGTGATTACATTTTCGGTGTTGTCAAATTTCTGTCATAGCCGTGCCATGGCACGAGGGATATTGTTCCTGCCACCATCGGGCGCAAACCCATGTTTATATGGTTAG 1560 0.4571 MNHPENIPTFKMSPPQFSSSSSTDIIDVTPQFPISNNPRSASDDGSHSFRRSRVPDNKQSNAPNRRTGNIFFKTRICTKFGFGSCRNGENCTFAHGADEIRQPPPNWQELVGPRTEERLQLGTNWNDDVKIIHKMKLCKKYCNGEICPYGDNCNFLHENPAKFRDDSWKTRESSAMGDMSICRAGSKPERGTYWKTKICLRWKNTGSCPFGDGCHFAHGDAELQVPGGGIEAEAAVSLANSTKVVIPTLPTGSSANNAPTLPASVSAMTEEEKKAKKELLWKKLNKINRIYDDWIDDISPDLPILSIAMTDPDNIPIFNMSPPQVASSSNSDINGVRPQFPINTSNHLCSWKEELRQPPPNWKELQRLHLGGNRDTSKFMNDIFFKTHLCANFVFRSCRNGENCSYAHGEEELRQSPPNWQELKRQQLGGNRDTAKFMNDSWKTRESSAITLRTIGNNLEGNKTGTKHARSRPLGDDCNYAHGDAVITFSVLSNFCHSRAMARGILFLPPSGANPCLYG* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0966 519 SUPERFAMILY CCCH zinc finger 132 159 IPR036855 GO:0046872
Psa4g0966 519 ProSiteProfiles Zinc finger C3H1-type profile. 71 98 IPR000571 GO:0046872
Psa4g0966 519 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 328 427 - -
Psa4g0966 519 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 17 300 - -
Psa4g0966 519 Pfam CCCH-type zinc finger 136 157 IPR041367 -
Psa4g0966 519 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 194 219 IPR000571 GO:0046872
Psa4g0966 519 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Psa4g0966 519 ProSiteProfiles Zinc finger C3H1-type profile. 384 411 IPR000571 GO:0046872
Psa4g0966 519 MobiDBLite consensus disorder prediction 1 43 - -
Psa4g0966 519 SUPERFAMILY CCCH zinc finger 382 415 IPR036855 GO:0046872
Psa4g0966 519 MobiDBLite consensus disorder prediction 1 65 - -
Psa4g0966 519 SUPERFAMILY CCCH zinc finger 192 224 IPR036855 GO:0046872
Psa4g0966 519 SUPERFAMILY CCCH zinc finger 69 102 IPR036855 GO:0046872
Psa4g0966 519 Pfam RNA-binding, Nab2-type zinc finger 390 409 - -
Psa4g0966 519 Pfam RNA-binding, Nab2-type zinc finger 77 96 - -
Psa4g0966 519 Gene3D - 131 164 - -
Psa4g0966 519 Gene3D - 377 416 - -
Psa4g0966 519 Gene3D - 65 102 - -
Psa4g0966 519 Gene3D - 185 225 - -
Psa4g0966 519 PANTHER CCCH ZINC FINGER/TIS11-RELATED 328 427 IPR045877 GO:0003729
Psa4g0966 519 PANTHER CCCH ZINC FINGER/TIS11-RELATED 17 300 IPR045877 GO:0003729
Psa4g0966 519 ProSiteProfiles Zinc finger C3H1-type profile. 193 221 IPR000571 GO:0046872
Psa4g0966 519 SMART c3hfinal6 384 410 IPR000571 GO:0046872
Psa4g0966 519 SMART c3hfinal6 71 97 IPR000571 GO:0046872
Psa4g0966 519 SMART c3hfinal6 193 220 IPR000571 GO:0046872
Psa4g0966 519 SMART c3hfinal6 132 159 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0966 Psa-Chr4 71475502 71488454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0966 195 224 C3H Transcription Factor Family AT1G68200 56.667 1.13e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g0966 zf-CCCH 2.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0966 - - aprc:113846184 308.531