Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0954 ATGGACGAAGATTTACTCAAGCGTAACACCGATTGCGTTTATTTCTTGGCTTCACCCCTCACTTGCAAGAAGGGTGTAGAGTGTGAGTATAGGCACCATGAAATTGCGAGGCTTAACCCGAGGGATTGCTGGTACTGGTTATTGGGAAATTGTCTTAATCCGACTTGTGCTTTCAGACACCCTCCATTGGATGGGCATGCTGGAGTGCCATCTGAACCTATACAATCTTCCGTACCTGCATCTGCAAACAAGACAATGGTTCCCTGTTATTTTTTCTTCAATGGGTTTTGCAACAAAGGTAGCAGATGCTCATTTTCACATAAGCCTGATGATAGCTTGCTTGTTGTAAAGCCTTTGAAGAATGACACTATAAAGCCTTTGAAGATCGACACTGTAAAGCCTTTGAAGAATGACACTGTAAAGCCTTTGAAGAATGACACTGTAAAATCTTTGAAGAATGACACTGTAAAGCCTTTGAAGAATGATAACGGAAACATTAATGCACTCAACTTAGAAAATAAAGCTTCATCAGGAAATAAAACATCGGTAGCACCAACACCAAGGGAAACACATTTTGAGCAATCTTTATCTGCTCCAAAAGCTTTGTCTGATACTAGACTTAAGTCTAAGGAAGACCTTCAGCTACCATTACCCGAAAATGTTAAACAGCAAACTGTTTGCTTGGAATTTTCTTCATTTGACTATAATGAAGCTGCTGTGACTCAGTCAGACTCTCTGGTACCAGACAATGGTTTTGCTCATAATATGTCTCATTCATGCTCTGAGCAGAGTTCGGAGGAGCAGGAAAACTGTCATGTAGAGCCTGAGGAACGGTGGGAATCCTCCCCTGGATTTGATGTTCTTGTTCATGATGAATCCGAGAATCTGGGTTATGAGAATGGTTCTGAATATTTGCCACTGCTTGATATGGATGACCACGTACTGAATGAGCAATATGCAGGGTATGAGTTTAAAAATACAGATGAGTACGACCCCATCTGCTCAGATGCTGATATTCTGTATGAACAGGCAACATGTGATGATTACAGATGTTTTGATAGAGATTTTGCCAGGGAAAGGGAAGTTTGTGGCTATTCCAGAGAGACAGCATTAGATTCTATATTTTCTGGGAAAAGGGTTCGGATGTCAGCTGTTGAGAGGGATGCTTGTGACTCTGACTTAGATCTACGTCACCATCTGAGAAGACGCCGGGAGGTCAATGATCCTCCTGTCACGGGTTTCTTTAGAAGACATGATGAGCCATCTTCTTTGATGGTTCAAAACCAGGAAAGGCATCGAAGGGGCGATGTTGTTCAGCGGCAAAATAGAAGATTAACATCACAACTAGGATTTAGTTCAATCAGAGAGGTTGAAGATCTTTCAATTGCTAACAACCACATGTTATTTAGGCCTTCCCAGCAAAATAGGCCAAGAAAGCATTATAGAGAAAAACCAGCTAGACGGCCATTTCCTTCATCTAAAGTATCCAGGAAACCAGTTGTAAAGCAACAGAGAGTTATTCAGGAATCCAGTACATTTTCAGGGCCCAAGACTCTTGCAGAAATAAAAGAAGAGAGGAAGAAGACTGGTGGAAGTTCACATTGTGAAAGCACGTCAGCTGGTTTCCAGGATCCCAAACCACTGCATGAAATTCTCAAAGACAGAAGGACCATGGACTGA 1680 0.4185 MDEDLLKRNTDCVYFLASPLTCKKGVECEYRHHEIARLNPRDCWYWLLGNCLNPTCAFRHPPLDGHAGVPSEPIQSSVPASANKTMVPCYFFFNGFCNKGSRCSFSHKPDDSLLVVKPLKNDTIKPLKIDTVKPLKNDTVKPLKNDTVKSLKNDTVKPLKNDNGNINALNLENKASSGNKTSVAPTPRETHFEQSLSAPKALSDTRLKSKEDLQLPLPENVKQQTVCLEFSSFDYNEAAVTQSDSLVPDNGFAHNMSHSCSEQSSEEQENCHVEPEERWESSPGFDVLVHDESENLGYENGSEYLPLLDMDDHVLNEQYAGYEFKNTDEYDPICSDADILYEQATCDDYRCFDRDFAREREVCGYSRETALDSIFSGKRVRMSAVERDACDSDLDLRHHLRRRREVNDPPVTGFFRRHDEPSSLMVQNQERHRRGDVVQRQNRRLTSQLGFSSIREVEDLSIANNHMLFRPSQQNRPRKHYREKPARRPFPSSKVSRKPVVKQQRVIQESSTFSGPKTLAEIKEERKKTGGSSHCESTSAGFQDPKPLHEILKDRRTMD* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0954 559 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Psa4g0954 559 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Psa4g0954 559 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Psa4g0954 559 Pfam Zinc-finger containing family 7 63 IPR041686 -
Psa4g0954 559 MobiDBLite consensus disorder prediction 497 517 - -
Psa4g0954 559 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Psa4g0954 559 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 558 - -
Psa4g0954 559 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Psa4g0954 559 MobiDBLite consensus disorder prediction 166 204 - -
Psa4g0954 559 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Psa4g0954 559 MobiDBLite consensus disorder prediction 166 202 - -
Psa4g0954 559 Gene3D - 75 146 - -
Psa4g0954 559 Gene3D - 3 63 - -
Psa4g0954 559 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Psa4g0954 559 MobiDBLite consensus disorder prediction 467 559 - -
Psa4g0954 559 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 558 - -
Psa4g0954 559 Pfam RNA-binding, Nab2-type zinc finger 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0954 Psa-Chr4 67271439 67275053 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g0954 zf-CCCH_3 1.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0954 - - mtr:MTR_4g114040 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0954 4 67271439 67275053 Psa4g0954 4 67271439 67275053 ECH