Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0938 ATGAGTTATTCAGAAAACATTCCAACATTTAAGATGTCACCGCCGCAATTCTCATCCTCCCACAGCGATATCATTCAGTTGACGCCTCAATTCCCGACGAGCAACGAAAGCTTTGAACACAGTCAGCGCTTTGAACACCATCAACGCTTTGAACACAATCAACGTTTTGAACCAAGTTCCGCATTGGATCATTCCCATTCCTTCAAAAGGCCAAGAATGTCTGACAACAGCCACTCCAATACACTGATGAGCCCTCCTCCAAGGATGGATCACCCTCCACCGAACAGACGAACTGGCAACATTTTCTTCAAGACCCGTATCTGTACTAGGTTTGGGTTTGGTAGTTGTAGAAACGGTGAAAATTGTAGCTTTGCTCATGGGGTTGAAGATATAAGGCAGCCACCACCAAACTGGCAGGAGCTTGTCCGTCCTCGCACTGAAGAACAGCCACAATTGGGCGGGAATTGGAATGATGATCAGAAAATCATTCACAAAATGAAGCTTTGCAAGAAGTATTACAATGGTGAGGAATGTCCTTATGGTGATAAGTGTAACTTTCTTCATGAGGATCCTGCAAAGTTTAAGTTTAGGGACGACTCTTGGAAAACAAGAGAGTCCTTTCCAATCAGCATTGGAACTTCTAATAATTTGGAAGGCAGTAGGGCTGGAAGTAAGCCAGAAAGGGGCACTTATTGGAAAACTAAGATATGTCTCAAGTGGATAAATACCAGGAGCTGTCCCTTTGGTGATAACTGTCACTTTGCTCATGGAGATGCAGAGTTACAAGTTCCTGCTGGAGGCATTGAAGCTGAAGCTGCAGTTGCCATAACAAATTCAACAAAAGCCGTCATTCCAGCTTTACTAACAACAGGTTCCTCTGTCAATGATGCACCTACTACCTTACCAGCAAATGTACCTGTTGCGATGGACGAGGAGAAGAAGACCAAGAAGGAATTACTTTGGAAGAAATTAAACAAGATCAACCATATTTATGGCGATTGGATTTGA 1008 0.4345 MSYSENIPTFKMSPPQFSSSHSDIIQLTPQFPTSNESFEHSQRFEHHQRFEHNQRFEPSSALDHSHSFKRPRMSDNSHSNTLMSPPPRMDHPPPNRRTGNIFFKTRICTRFGFGSCRNGENCSFAHGVEDIRQPPPNWQELVRPRTEEQPQLGGNWNDDQKIIHKMKLCKKYYNGEECPYGDKCNFLHEDPAKFKFRDDSWKTRESFPISIGTSNNLEGSRAGSKPERGTYWKTKICLKWINTRSCPFGDNCHFAHGDAELQVPAGGIEAEAAVAITNSTKAVIPALLTTGSSVNDAPTTLPANVPVAMDEEKKTKKELLWKKLNKINHIYGDWI* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0938 335 SUPERFAMILY CCCH zinc finger 100 133 IPR036855 GO:0046872
Psa4g0938 335 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 26 335 - -
Psa4g0938 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 127 IPR000571 GO:0046872
Psa4g0938 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 257 IPR000571 GO:0046872
Psa4g0938 335 SUPERFAMILY CCCH zinc finger 163 190 IPR036855 GO:0046872
Psa4g0938 335 ProSiteProfiles Zinc finger C3H1-type profile. 231 259 IPR000571 GO:0046872
Psa4g0938 335 Gene3D - 160 191 - -
Psa4g0938 335 Gene3D - 96 133 - -
Psa4g0938 335 Gene3D - 224 263 - -
Psa4g0938 335 SUPERFAMILY CCCH zinc finger 230 262 IPR036855 GO:0046872
Psa4g0938 335 SMART c3hfinal6 163 190 IPR000571 GO:0046872
Psa4g0938 335 SMART c3hfinal6 102 128 IPR000571 GO:0046872
Psa4g0938 335 SMART c3hfinal6 231 258 IPR000571 GO:0046872
Psa4g0938 335 MobiDBLite consensus disorder prediction 39 73 - -
Psa4g0938 335 MobiDBLite consensus disorder prediction 36 95 - -
Psa4g0938 335 PANTHER CCCH ZINC FINGER/TIS11-RELATED 26 335 IPR045877 GO:0003729
Psa4g0938 335 ProSiteProfiles Zinc finger C3H1-type profile. 102 129 IPR000571 GO:0046872
Psa4g0938 335 Pfam CCCH-type zinc finger 167 188 IPR041367 -
Psa4g0938 335 ProSiteProfiles Zinc finger C3H1-type profile. 163 191 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0938 Psa-Chr4 64915537 64918980 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0938 233 262 C3H Transcription Factor Family AT1G68200 56.667 7.52e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g0938 zf-CCCH 1.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0938 - - gmx:100793865 351.288