Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0937 ATGATCAGAATGAAGCTTTGCAAGAAGTATTACAATGGTGAGGAGTGTCCTTATTATAATAAGTGTAGCTTTCTTCATGAGAATCCTGCTAAGTTTAGGGACGACTTTTGGAAAACAAGAGAGTCCTCTACCATCAGCATTGGAACTTGTAATAATTTGGAAGGCAATAGGGTTGGGACTATGCCAGCAAGGGGCACTTATTTGAACGCTAAGACTTGTCTTAAGTGGATGAATACCGGGAGCTGTCCCTTTGGTGATAACTGCTTTGCTCATGGAGATGCAGAGTTACAAGATCCTGATGGGAGCATTGAAGCAGAAGCTGCAGTTGCCAAAGCAAATTCAACAAAAGCTGTCATTCCAACTTTACCAACAATAAGTTGTTCGACCAATGATGCACCTACTGTACCAGCAACTGCGGCGATGGAAGAGGAGAAGAAGGCAAAGAAGAAATTACTTTGGAAGAAATTAAACAAGTCAACCGTATTAATGGCGATTGGATTGATGATTAACCTCTAA 516 0.4109 MIRMKLCKKYYNGEECPYYNKCSFLHENPAKFRDDFWKTRESSTISIGTCNNLEGNRVGTMPARGTYLNAKTCLKWMNTGSCPFGDNCFAHGDAELQDPDGSIEAEAAVAKANSTKAVIPTLPTISCSTNDAPTVPATAAMEEEKKAKKKLLWKKLNKSTVLMAIGLMINL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0937 171 SUPERFAMILY CCCH zinc finger 3 28 IPR036855 GO:0046872
Psa4g0937 171 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 158 - -
Psa4g0937 171 ProSiteProfiles Zinc finger C3H1-type profile. 1 29 IPR000571 GO:0046872
Psa4g0937 171 SMART c3hfinal6 69 93 IPR000571 GO:0046872
Psa4g0937 171 SMART c3hfinal6 1 28 IPR000571 GO:0046872
Psa4g0937 171 Gene3D - 2 96 - -
Psa4g0937 171 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 158 IPR045877 GO:0003729
Psa4g0937 171 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 73 92 IPR000571 GO:0046872
Psa4g0937 171 SUPERFAMILY CCCH zinc finger 68 97 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0937 Psa-Chr4 64889420 64890960 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g0937 zf-CCCH 0.00012 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0937 - - aprc:113846184 157.918