Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0924 ATGGTTCAGTCAAAAAAGTTCAGAGGTGTCAGACAGCGTCATTGGGGTTCTTGGGTTTCTGAAATTCGTCATCCACTTTTAAAGAGAAGGGTGTGGCTAGGAACATTTGAAACAGCTGAGGAAGCAGCAAGAGCTTACGATCAAGCAGCAATTTTAATGAGTGGTCGAAATGCGAAAACAAATTTCCCTATAACACAAACTCCGGAAGGTGATCCGAAGAACAGTGTAACTACTGATAAGGACAAGCATTTGAAATCTTCGAAGGATCTAGAAGAAATCTTACGCGCCAAGCTTCGAAAATGTGGGAAGTTACCATCTCCTTCCATGACTTGTTTGAGGTTAGACACAGAAAACTCTCACATTGGTGTGTGGCAAAAACGTGCTGGGAAATGTTCTGATTCGAATTGGGTTATGACTGTTCAACTTGGAAAAAATAAGAGTGTGATTGAAAATAATGGTAGCGCTAGTACTAGTACTAGTAATAGTAGTAGTGTCGTGCCTTCGTCTTCATCGATGGTGGCGACCGGAGAGCAAATCGTGCGTGGAGAGATTGATGAAGAAGATAGAATTGCACTTCAAATGATAGAAGAACTTCTGAATGATAAGAATTGCCCTAGCTCATCAACTAACAATGCTAAACAAGGGGATGATATTCATAACAGCTTTTTTATTTAA 675 0.403 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKNSVTTDKDKHLKSSKDLEEILRAKLRKCGKLPSPSMTCLRLDTENSHIGVWQKRAGKCSDSNWVMTVQLGKNKSVIENNGSASTSTSNSSSVVPSSSSMVATGEQIVRGEIDEEDRIALQMIEELLNDKNCPSSSTNNAKQGDDIHNSFFI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0924 224 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Psa4g0924 224 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Psa4g0924 224 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Psa4g0924 224 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Psa4g0924 224 MobiDBLite consensus disorder prediction 65 84 - -
Psa4g0924 224 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Psa4g0924 224 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 211 - -
Psa4g0924 224 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Psa4g0924 224 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Psa4g0924 224 MobiDBLite consensus disorder prediction 151 173 - -
Psa4g0924 224 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Psa4g0924 224 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0924 Psa-Chr4 63780489 63782052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0924 1 200 AP2-EREBP Transcription Factor Family AT1G15360 60.294 2.28e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa4g0924 AP2 9.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0924 - - gsj:114375848 309.686