Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0922 ATGGAACTTCATTTGAGTCTCGCTCTCTCCAATTCTCATGCCTACGATGCTTCTACCAAGACTCATTTCCCTAATAACAAACGTAGTTTTTCCCAATTCTTGGAACATGCAGAAGAAACGTCTACTAACACCAACGGATCAGATGTTATATTTCCTACTCTTTCTCTCCTCCCGTTAACTCCTAGCAACTCAGATCATCATGATCATGAACACTCCTGTCACAGTTCCACTTCCACCATCACCAAGACTAGTAACGGTGAGGATGATGAAGAACCTCTCGTGGGTTGGCCTCCGGTTTATTATAGGAGGAAGAAACTTCGTTATAATGAGGATCACGTGATGTCAAGGAACTACGTGAAGGTGAAGATGGAGGGTGTAGGAATAGCTCGAAAAGTTAATCTTAGCTCGCACCATTCATTTCACACTCTCAACCAAACTTTGATGAACATGTTTGGAAAATGTGATGATGATCAACAGTATGAACTGGTTTATCAAGACAATGAAGGTGACTGGCTTCTTGCTCAAGATGTTTCATGGAGAAGTTTCATTGATTGTGCCCAACGCCTCAAATTGCTCAAGAGCAGAGAATAA 591 0.4179 MELHLSLALSNSHAYDASTKTHFPNNKRSFSQFLEHAEETSTNTNGSDVIFPTLSLLPLTPSNSDHHDHEHSCHSSTSTITKTSNGEDDEEPLVGWPPVYYRRKKLRYNEDHVMSRNYVKVKMEGVGIARKVNLSSHHSFHTLNQTLMNMFGKCDDDQQYELVYQDNEGDWLLAQDVSWRSFIDCAQRLKLLKSRE* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0922 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 1 194 - -
Psa4g0922 196 Pfam AUX/IAA family 157 196 IPR033389 -
Psa4g0922 196 Pfam AUX/IAA family 17 153 IPR033389 -
Psa4g0922 196 SUPERFAMILY CAD & PB1 domains 116 191 - -
Psa4g0922 196 MobiDBLite consensus disorder prediction 62 89 - -
Psa4g0922 196 ProSiteProfiles PB1 domain profile. 116 196 IPR000270 GO:0005515
Psa4g0922 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 194 IPR003311 GO:0005634|GO:0006355
Psa4g0922 196 Gene3D - 112 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0922 Psa-Chr4 63466940 63472107 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0922 116 196 B3 DNA Binding Superfamily AT5G20730 34.884 4.11e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Psa4g0922 AUX_IAA 1.8e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0922 K14484 - gmx:100804096 155.221