Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0920 ATGGCTTCGAGATTCTGGACCCAGGCTGGTAGTGATTCTGAAGATGAAGAGAGTGATTATGATGAGGAGGTTGATGAAGTAGCAGGTGAATCTGGCCCTGATCCGACTAAAACCAATTACTACCTTCAGGGTAATGCTAGTGACAGTGATGACTCTGATGGCCAAAAGCGTGTTGTTAGATCGGCAAAAGATAAACGATTTGAAGAGATGGCTTCAACTGTTGACCAGATGAAGAATGCAATGAAGATTAATGATTGGGTGAGTTTGCAAGAGAGTTTTGACAAGATTAATAAACAGCTCGAGAAAGTTATGCGTGTGGCGGAGACTGATAAGATTCCTAGTCTTTATGTTAAGGCTCTTGTCATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCGAATAAGGATGCTAAGAAGAAGATGAGTAGTAGTAATGCCAAAGCTTTGAACTCGATGAAGCAGAAGTTGAAGAAGAATAATAAGCAATATGAGGAGTTGATTAATAAGTGTAGGGAGAGTCCTGAGAGTGAGGAGGAAAAGGAGGAGGAGGAGGAGAGCGAGGAGGAAGATGAAAGTGATGGTGAGATTATTGAGCCGGAACAGCTTCGTAAGCGGGAACTTAAATCGGATTCGGAAGTTGAATACGAGGATGGAAAGGAAGATGCTGGTGAAGGACCTTGGGACCAGAAGCTTAGTAAGAAAGATAGACTTTTGGATAGACAGCTCATGAAAGATCCAAGGGAGGTCACATGGGATATCGTTAACAAGAAGTTCAAGGAGATTGTGGCGGCTAGGGGCAGGAAGGGAACTGGGAGGTTTGAACAGGTTGAGCAGCTTACCTTCTTAACAAAAGTGGCTAAAACACCTGCGCAGAAGCTTGAGATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCTGGCCTCAGTGGCCATATGCCAATAACTGTGTGGAAAAAGTGTGTTCAGAATATGCTGCTCATCCTTGATATTCTAGTTCAGTTTCCAAACATAAAGGTTGATGATTCGGTAGAGCCAGATGAAAATGAAACTCAGAAAGGGACTGACTATAATGGACCAATTAGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAAAATAGATACCGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACAGGGGAGTATGCTGCGAGACTCAAGGATGAGCCCTTGTTTTTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGTAGTGGGGATTTCAAAGCATCTTCTAAGGTAGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGATCTGACCGAAGATGGAGAGAATGAAGGGGAGGCGAGCGAGGAGTCAAAAGGGTTTGAGGATACAAGAATTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGGCTCGGAAACCCACCTTCCCGGAGAATAGCAGGACTCTGATGGATGTTTTAGTTTCACATATATACAAACATGGTGATGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCACCACGCTCTTCTTAATGAATTCTCAATAGCTCGTGATCTGCTGCTTATGAGTCATTTGCAAGAAAATGTTCAGCACATGGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGATTGATTTCTGAAGCGCATGGCTGTCTATCTGAACTTTATTCAGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTGCAGAACAGGAAAGGTTGGAAAGAAGAAGACAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAAGCAGTGCATCTTATATCTGCTATGCTGCTGGAGGTTCCCAATATGGCAGCCAATGTTCATGATGCCAAGCATAGGGTCATCAGTAAGAATTTCCGCCGCTTGCTTGAGATCAGTGATAAACAAACGTTCACTGGTCCTCCCGAGAGTGTCAGAGATCACATTATGGCTGCCACAAGGGTTCTTATTAAAGGAGACTTCAATAAGGCTTTTGACATTATTACCTCTCTCGATGTATGGAAATTTGTGAAAAATCGAGAAGCTGTACTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCCCTTAGGACATATCTCCTAACCTTCTCTTCATCCTATGAGTCTTTGAGTGTGGATCAAGTCACAAATTTTTTTGACCTCTCTGTTCCTCGCACTCATAGCATTGTGAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAAATGTTGAGCACTCTAGGCTGCAAGCATTGGCATTTCAGTTGACAGATAAATTATCTATTCTTGCAGAGAGTAATGAGAGAGCCACAGAGGCAAGGATAGGTGGTGGATTGGATCTGCCCCCAAGACGGAGGGATGGCCAGGACTATGCTGCTGCTGCTACTGGAGGCGGCAGTGGAACAGGGTCAGGTGGTAGGTGGCAAGACTTGTCCCATTCTCAGCCACGGCAAGGGAGTGGACGTGCAGGGTATGGTAATGCTGGTGGAAGGCCATTGGCATATGGTCAAACAGCTAGGAGTGGCTATTCAAGGGATCGAACGGGTCGTGGAACAGGTGGTGGTTATCAGAGTTCAGGGAGGGCTACTCAAGGGGGTTCAGGACTGAGGGGATCCCAGGGCGATGTATCTACTCGAATGGTTAGCCTTAAGGGAGTTCGTGCTTAA 2808 0.4452 MASRFWTQAGSDSEDEESDYDEEVDEVAGESGPDPTKTNYYLQGNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVAETDKIPSLYVKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRESPESEEEKEEEEESEEEDESDGEIIEPEQLRKRELKSDSEVEYEDGKEDAGEGPWDQKLSKKDRLLDRQLMKDPREVTWDIVNKKFKEIVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQFPNIKVDDSVEPDENETQKGTDYNGPIRVWGNLVAFLEKIDTEFFKSLQCIDPHTGEYAARLKDEPLFLVLAQNVQEYLESSGDFKASSKVALRRVELIYYKPQEVYDAMRKLADLTEDGENEGEASEESKGFEDTRIPTAFVVTPELVARKPTFPENSRTLMDVLVSHIYKHGDERTKARAMLCDIYHHALLNEFSIARDLLLMSHLQENVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTAEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDAKHRVISKNFRRLLEISDKQTFTGPPESVRDHIMAATRVLIKGDFNKAFDIITSLDVWKFVKNREAVLEMLKDKIKEEALRTYLLTFSSSYESLSVDQVTNFFDLSVPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEHSRLQALAFQLTDKLSILAESNERATEARIGGGLDLPPRRRDGQDYAAAATGGGSGTGSGGRWQDLSHSQPRQGSGRAGYGNAGGRPLAYGQTARSGYSRDRTGRGTGGGYQSSGRATQGGSGLRGSQGDVSTRMVSLKGVRA* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0920 935 Coils Coil 145 172 - -
Psa4g0920 935 MobiDBLite consensus disorder prediction 849 868 - -
Psa4g0920 935 MobiDBLite consensus disorder prediction 888 926 - -
Psa4g0920 935 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 930 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Psa4g0920 935 MobiDBLite consensus disorder prediction 136 155 - -
Psa4g0920 935 MobiDBLite consensus disorder prediction 156 175 - -
Psa4g0920 935 MobiDBLite consensus disorder prediction 176 195 - -
Psa4g0920 935 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 871 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Psa4g0920 935 SMART PINT_4 722 810 IPR000717 -
Psa4g0920 935 Pfam PCI domain 661 789 IPR000717 -
Psa4g0920 935 MobiDBLite consensus disorder prediction 12 29 - -
Psa4g0920 935 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 45 653 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Psa4g0920 935 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 930 - -
Psa4g0920 935 MobiDBLite consensus disorder prediction 196 227 - -
Psa4g0920 935 MobiDBLite consensus disorder prediction 1 64 - -
Psa4g0920 935 ProSiteProfiles PCI domain profile. 621 793 IPR000717 -
Psa4g0920 935 SUPERFAMILY "Winged helix" DNA-binding domain 720 792 IPR036390 -
Psa4g0920 935 MobiDBLite consensus disorder prediction 134 227 - -
Psa4g0920 935 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 722 810 - -
Psa4g0920 935 MobiDBLite consensus disorder prediction 842 935 - -
Psa4g0920 935 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0920 Psa-Chr4 63107233 63113012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0920 1 935 Eukaryotic Initiation Factors Gene Family AT3G56150 67.439 0.0 1184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0920 K03252 - gmx:100779751 1454.5