Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0918 ATGGCATGGTCTGATTCAACTACTCACAAACAATCTCGTCCCTCTCAACCCCTCTACGTGCCTCAATTCCGTTCCAATGTTCCTCCTCCCTACAACAACCGAACCCATTTTCCTCCGTCCGAGGATTCATCATCTTTCAATCGCTCCACTCACAGACCACGTGGCCGAGGCGGTTACGGTTATGGTCCTCCACGTCATTTCCCTCGACCCGAACAACAACAACCGCCGCGGAACTTCAACTACAACCACGATCCTCCTCATCGGAACAATCGCCCTCCGGTTGAGCCCCGCATTGAGCCGGAAAACGGCGTCGTTGCGAATTTCGAAGCGTATGAATCTATCCCCGTTGAGGCTACCGGCGAGAACGTGCCTCCGCCGGTGAATGTCTTTGCTGAAACCGAACTTCATGAGGATTTGAAGAATAACATTGAGAGATGTAAGTATGTGAAACCTACTCCGGTTCAGCGTTACGCGATCCCCATTGCTGTTGCCGGGAGAGACCTTATGGCCTGTGCTCAGACTGGGTCTGGTAAAACGGCGGCGTTTTGTTTTCCGATTATATCTGGGATTATGAAAGATCGTTTAGGTTCTGGGTTGTCGGCTATGCCACGTGGCGGTGGTTCCGATGTTGCGTACCCCACTGCACTCATCTTGTCTCCAACTAGGGAGTTATCATGCCAGATACATGCTGAAGCAAACAAGTTTGCTTATCAAACAGGAGTGAAGATTGCGGTTGCTTACGGGGGTGCTCCTATTGGTCAACAGCTACGTGTTTTGGAGAGAGGTGTTGATATTTTGGTTGCAACTCCTGGGCGTTTGGTGGATATGATTGAAAGAGAAAGCTTTGAAGAAGAATTAAGTATCTTGCTTTGGATGAGGCTGATCGGATGCTGGACATGGATGAACATGCCTGCTCCGGGAGCTAGACAGACTTTGCTTTTCAGTGCCACCTTTCCTGATAATATACAGAAGCTTGCATCTGACTTTTTGTCAAACTATGTGTTCCTGGCTGTTGGAAGGGTTGGTTCAAGCACTGAATTGATTGTACAGAAAATTGAATCTGTTCAGGATATGGAGAAAAGGAATCGTCTTGTGGATCTTCTCCGACGCAATGTAGTCAATGGGAAGCTTGCTTTATCTCTTATATTTGTTGAAACAAAGAAAGGAGCAGATGCTTTAGAAAGTTGGCTATGCAGAAGTGGTTTTCCAGCTATTGCAATACATGGTGACAAGGTTCAAATGGAGCGGGAGCGAGCTTTGAGATCTTTTAAACGTGGTCTTACTCCAATAATGGTTGCAACAGATGTTGCTTCTCGAGGATTGGATATACCTCATGTGGCTCATGTTATAAACTTTGACTTGCCGAGAGACATAGATGACTATGTACATAGAATTGGTAGAACAGGCCGTGCTGGTCAGTCTGGTTTAGCAACTGCTTTCTTCAGCAGCAAAAACATGCCACTTGCGAAGAGTCTTGTTGGACTTTTGCAAGAAGCAAAACAAGAAGTTCCTTCTTGGCTAATCCAGTATTCTGAGTCTTCAGCACCAGGTGGACGCGGCAGCTTTGGATCTCAACGGCCGCCCTGGAGAGGCAATTATGGAGGGCGTGATTTCCGGACTGCAGCAGAACCTGTAATGGTGGAGAGTTACAATAACTACAACAGTAGTTACAGTAATTATGGTGATAATGGTTTCCATAATGTTCCCGAACAGGTGCAGAATTACAACTACAACCGCACCTACAGCAATGGAGGAGACCATACTGCCAACACTTATACTGATACCTCTTTAAACAACCAAAACTCTAACAACAATACCGCTTTTGACAGCAGTAATACAGAGGTTGCTGGTGGTTACAATTATGCTGATGTTGGTTTGTGTGAAGGCAGTGATGGCATAAACGGGCCATGTGGTTATGCATCTGTTGTGCCAACTGGATGGGACTGA 1947 0.4653 MAWSDSTTHKQSRPSQPLYVPQFRSNVPPPYNNRTHFPPSEDSSSFNRSTHRPRGRGGYGYGPPRHFPRPEQQQPPRNFNYNHDPPHRNNRPPVEPRIEPENGVVANFEAYESIPVEATGENVPPPVNVFAETELHEDLKNNIERCKYVKPTPVQRYAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGIMKDRLGSGLSAMPRGGGSDVAYPTALILSPTRELSCQIHAEANKFAYQTGVKIAVAYGGAPIGQQLRVLERGVDILVATPGRLVDMIERESFEEELSILLWMRLIGCWTWMNMPAPGARQTLLFSATFPDNIQKLASDFLSNYVFLAVGRVGSSTELIVQKIESVQDMEKRNRLVDLLRRNVVNGKLALSLIFVETKKGADALESWLCRSGFPAIAIHGDKVQMERERALRSFKRGLTPIMVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGQSGLATAFFSSKNMPLAKSLVGLLQEAKQEVPSWLIQYSESSAPGGRGSFGSQRPPWRGNYGGRDFRTAAEPVMVESYNNYNSSYSNYGDNGFHNVPEQVQNYNYNRTYSNGGDHTANTYTDTSLNNQNSNNNTAFDSSNTEVAGGYNYADVGLCEGSDGINGPCGYASVVPTGWD* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0918 648 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 511 IPR001650 -
Psa4g0918 648 MobiDBLite consensus disorder prediction 1 57 - -
Psa4g0918 648 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 42 552 - -
Psa4g0918 648 CDD SF2_C_DEAD 348 481 - -
Psa4g0918 648 Pfam DEAD/DEAH box helicase 152 283 IPR011545 GO:0003676|GO:0005524
Psa4g0918 648 SMART helicmild6 391 472 IPR001650 -
Psa4g0918 648 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 336 IPR014001 -
Psa4g0918 648 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 42 552 - -
Psa4g0918 648 Pfam Helicase conserved C-terminal domain 360 472 IPR001650 -
Psa4g0918 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 487 IPR027417 -
Psa4g0918 648 SMART ultradead3 147 351 IPR014001 -
Psa4g0918 648 MobiDBLite consensus disorder prediction 1 46 - -
Psa4g0918 648 Gene3D - 339 514 IPR027417 -
Psa4g0918 648 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Psa4g0918 648 Gene3D - 95 338 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0918 Psa-Chr4 62933954 62936770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0918 126 492 Eukaryotic Initiation Factors Gene Family AT3G19760 29.134 3.48e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0918 K11594 - gmx:100817549 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0918 4 62933954 62936770 Psa4g0918 4 62933954 62936770 ECH