Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0912 ATGGAGAATTCGACGACAGAAAAAGGTGGTGGTGGTGGTCCGTCAAAGTTCCTAGTGAAAATTTACCAGATGGTTGATGATCCATATATTGATAATATAGTATCATGGAGTCAAAGCCACAACAGTTTCATCATTAAGGACCCTGATGAATTCGCTAGCAATCTTCTTAGCAAGTATTTCAGACACAACAATTTCTCCAACTTTGTTTGTCAGCTCAATACCTATGGATTTCACAAAATAAAACATGATCAATGGGAGTTTGCTAATGAGTATTTTCTGAAAGATCAATATTATCTTCTTGGTAATATTCAAGGCAAGCAAATTGTTCACAATCACTCTCTTGGAGAAGTAGAAAGGCTAGCATTTGAAGAAGAAATTGAGAAACTTGAAAATGAAAAATCCTCTATTGAACTAGATATTTCTAACTTCAATCAGTACATGCCAACTAAAAAGCTTCATGTGGATAATCTAGTGCAAAGATTAGAAGCATCAGAGTATAGGCTTAGTAATTTGAAGAACTCGTTTGAAATGGTTCTTCAATACCTATGGATTTCACAAAATAAAACATGA 570 0.3421 MENSTTEKGGGGGPSKFLVKIYQMVDDPYIDNIVSWSQSHNSFIIKDPDEFASNLLSKYFRHNNFSNFVCQLNTYGFHKIKHDQWEFANEYFLKDQYYLLGNIQGKQIVHNHSLGEVERLAFEEEIEKLENEKSSIELDISNFNQYMPTKKLHVDNLVQRLEASEYRLSNLKNSFEMVLQYLWISQNKT* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0912 189 Coils Coil 112 146 - -
Psa4g0912 189 Pfam HSF-type DNA-binding 17 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0912 189 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0912 189 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0912 189 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0912 189 Coils Coil 154 174 - -
Psa4g0912 189 Gene3D - 12 107 IPR036388 -
Psa4g0912 189 SUPERFAMILY "Winged helix" DNA-binding domain 13 104 IPR036390 -
Psa4g0912 189 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 9 177 - -
Psa4g0912 189 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 177 IPR027725 -
Psa4g0912 189 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0912 Psa-Chr4 62119034 62120093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0912 13 188 HSF AT2G26150 39.583 5.57e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa4g0912 HSF_DNA-bind 6.3e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0912 K09419 - gmx:100816484 174.096