Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0890 ATGTACAAGATTCGAGTATTAAAGTATAAAAGGCTGATAGAAACTGGGAACTTTGGAGGGCTAAGTGAAGATTTGGCTTTGAGAAGGTTTACATACAATGAGCTAGAGAAGTTGGTGGAAGAAGGAGAAAGAGAGTTTCAAGCAGAAGTGAGAGCCATTGGAAAAACCCACCACAGGAACCTAGTTAGGTTGCTTGGTTTTTGTGCTGAGGGTTCTGAAAGGCTTCTGGTTTATGAATACATGATCAATGGTTCACCTGGAAAGCTTCTGTTCGGTGATCAAAGACGTCCATATTGGGATGAGAGAGTAAAAATAGCACTGGATATTGCTAGAGGGATGTTGTATCTCCATGAAGAGTGTGAGGCACCAATCATTCATTGTGACATAAAGCCTCAAAACATTTTGATGGATGAGTTTTGGACTGCCAAGATATCTGATTTTGGTCTTGCAAAACTTCTAATGCCGGACCAAACCAGAACTTTCACAGTGGTAAGAGGGACAAGAGGCTATATGGCTCCGGAATGGAACAAGAACGTGCCAATATCACTGAAGGCAGATGTTTGTAGCTATGGAGCAATGCTGTTGGAAATTTTGTGTTGCAGAAGAAACCTAAATATTTGTGTCATGTTATGTATTCTTGTTTTTGTTTCACTTGTTAAGGTTGTCAATGTGTTGTGA 678 0.4027 MYKIRVLKYKRLIETGNFGGLSEDLALRRFTYNELEKLVEEGEREFQAEVRAIGKTHHRNLVRLLGFCAEGSERLLVYEYMINGSPGKLLFGDQRRPYWDERVKIALDIARGMLYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTVVRGTRGYMAPEWNKNVPISLKADVCSYGAMLLEILCCRRNLNICVMLCILVFVSLVKVVNVL* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0890 225 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Psa4g0890 225 SUPERFAMILY Protein kinase-like (PK-like) 15 205 IPR011009 -
Psa4g0890 225 SMART serkin_6 7 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0890 225 Gene3D Transferase(Phosphotransferase) domain 1 82 210 - -
Psa4g0890 225 Gene3D Phosphorylase Kinase; domain 1 9 81 - -
Psa4g0890 225 ProSiteProfiles Protein kinase domain profile. 7 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0890 225 PANTHER RUST RESISTANCE KINASE LR10-RELATED 35 214 IPR045874 GO:0004672
Psa4g0890 225 Coils Coil 32 52 - -
Psa4g0890 225 Pfam Protein kinase domain 40 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0890 225 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 35 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0890 Psa-Chr4 59405762 59407296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0890 40 205 Receptor kinase-like Gene Family AT5G20050 44.633 8.70e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Psa4g0890 Pkinase 5.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0890 - - ahf:114924106 323.553