Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0871 ATGGCTGCAGCGTTTCAGTCACTTTCATGGCAAGATATTCAGGCACCTAGCCACTGCATGAATCCAGAGTACAGGATCCGAACCACCGGCAGCACTTCCAAATGCAACGATAGGATTGCAATGCGCACCGCACCAACCGCTCATGTTACTCAAGAAAGAGTCGTTAACCGCCCTCCCGAGAAGAGGCAGCGTGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATTCAGAGGATTAAAGCTAATAATCCTGATATTAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAAAATTGGGCACATTTTCCTCATATTCATTTTGGGCTCATGTTGGAGAGCAACAATCAAGCTAAGATGGAGAATGTGTCTGAGAAGCGTTTGATGTCAAGGGCTGCACTAATGAACATGAACAAATGA 420 0.4476 MAAAFQSLSWQDIQAPSHCMNPEYRIRTTGSTSKCNDRIAMRTAPTAHVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMENVSEKRLMSRAALMNMNK* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0871 139 Pfam YABBY protein 22 110 IPR006780 GO:0007275
Psa4g0871 139 PANTHER AXIAL REGULATOR YABBY 5 1 127 - -
Psa4g0871 139 Gene3D High mobility group box domain 48 130 IPR036910 -
Psa4g0871 139 PANTHER PROTEIN YABBY 6-RELATED 1 127 IPR006780 GO:0007275
Psa4g0871 139 SUPERFAMILY HMG-box 54 103 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0871 Psa-Chr4 57650702 57654156 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0871 1 120 C2C2-YABBY Transcription Factor Family AT2G26580 70.833 1.51e-53 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Psa4g0871 YABBY 4.2e-41 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0871 K25796 - gmx:100804731 241.891