Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0860 ATGGAGATGGAGAACAACAAGTGTGGCTGTTGGTCTGTCCTCAAACGTGGTGTTTGTAAACCCTCTGCTTCTAGACAATCTCCTAACACTATACCTCGTACTAGTCTCGTTCATGATGCAGCAACCGAGACGCGATATCTGAACGCTAGCAATCGGGAGCTCTGTCCTCCAAATGAAGTTAGGCTGTCTTCTGATAATCCTGACCCCCCACCACCTCAGGAAAATAAGGCTCCTTGCCAGCTTCTTCAATTCACATTTCAAGAGCTAAAATCTGCGACCGGGAATTTCAGACCTGATAGCATTCTTGGGGAGGGGGGTTTTGGTTATGTTTTCAAAGGATGGATCGAGGAAGGTGGAACTGCCCCGGCGAAACCTGGTTCGGGGGTTACAGTAGCTGTTAAAAGCTTGAAGCCAGATGGTCTTCAGGGTCATAGAGAATGGGTGGCTGAAGTTGATTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATTGGATACTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACTCGTGGAAGTCTCGAAAATCATCTATTTAGAAGAACGGTACCTCTTCCATGGTCTAATAGGGTGAAGATTGCACTTGGTGCTGCTAAAGGATTAGCTTTCCTACATAATGGTCCAGAACCAGTCATTTACAGAGATTTCAAAACATCAAACATTTTGCTCGATACGGAGTATAATGCGAAGCTTTCAGATTTCGGTCTAGCGAAAGCAGGTCCTCAAGGAGACAAGACACATGTTTCCACCAGAGTTGTTGGAACTTATGGCTATGCTGCACCAGAATATGTCATGACAGGACACTTGACTGCTAAGAGTGATGTTTATAGCTTTGGAGTTGTGTTACTCGAGATTTTAACAGGACGGAGATCAATGGACAAGAAACGTCCGAGCGGGGAACAGAATCTTGTTTCATGGGCCAGACCATATTTAGCAGACAAGCGAAAACTTTACCAACTTGTCGATCCTCGCTTGGAACTAAACTATTCCTTAAAAGCAGTACAGAAAATTTCTCAGTTAGCTTATGGTTGTCTCAGTAGAGACCCTAAATGTCGTCCTAACATGGACGAAGTTGTGAATGCTCTTACACCGCTGCAGGATCTTAACGACTTTGCAATCCTGTCGTATCACTCTCGTTTATCTCAACAAGGGAGAAGAAAGAAGAAACCAGATGGAACTCCGCATATCACCTATACGCATTCCAAAAGCATGAGGGCTTCGCCTTTGAATACCGGAAGACACCTACGATGA 1290 0.4457 MEMENNKCGCWSVLKRGVCKPSASRQSPNTIPRTSLVHDAATETRYLNASNRELCPPNEVRLSSDNPDPPPPQENKAPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEEGGTAPAKPGSGVTVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKAVQKISQLAYGCLSRDPKCRPNMDEVVNALTPLQDLNDFAILSYHSRLSQQGRRKKKPDGTPHITYTHSKSMRASPLNTGRHLR* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0860 429 Pfam Protein tyrosine and serine/threonine kinase 100 375 IPR001245 GO:0004672|GO:0006468
Psa4g0860 429 ProSitePatterns Protein kinases ATP-binding region signature. 102 134 IPR017441 GO:0005524
Psa4g0860 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Psa4g0860 429 Gene3D Transferase(Phosphotransferase) domain 1 182 392 - -
Psa4g0860 429 PANTHER OS01G0588500 PROTEIN-RELATED 72 395 - -
Psa4g0860 429 SUPERFAMILY Protein kinase-like (PK-like) 78 383 IPR011009 -
Psa4g0860 429 Gene3D Phosphorylase Kinase; domain 1 72 181 - -
Psa4g0860 429 MobiDBLite consensus disorder prediction 393 429 - -
Psa4g0860 429 ProSiteProfiles Protein kinase domain profile. 96 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0860 429 CDD STKc_IRAK 102 378 - -
Psa4g0860 429 PANTHER OS01G0588500 PROTEIN 72 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0860 Psa-Chr4 54194032 54196212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0860 57 375 Glycoside Hydrolase AT3G07070 53.251 1.58e-111 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa4g0860 PK_Tyr_Ser-Thr 7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0860 - - gmx:100785385 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0860 4 54194032 54196212 Psa4g0860 4 54194032 54196212 ECH