Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0837 ATGTCCAATAATGATCTTCCTAAAGGCGAATCCGCATCCCTCATTCGCCAACCCTTGTTATCTTCTTCTCAAAGATCCATTGTCAACTCTACCTCTCAAGTTGCCATCGTTGGTGCCAATGTCTGCCCTATTGAAAGCCTTGATTACGAGATTTTTGAGAACGAATTCTTCAAACAGGATTGGAGAAGTAGAGGGGTTGTTCAGATTTTTCAGTACATATGTATGAAGTGGCTATTGTGTCTCATGATTGGTGTGATTGTTGGTTTTATTGGGTTTTGCAACAATCTTGCTGTTGAAAATCTTGCTGGGATCAAGTTTGTTATCACATCTAATATGATGTTGCAGAGGAGGTTTCTGTTGGCCTTTGTTATATTTTTTGCTTCAAATTTGATTCTCACTCTTTTTGCATGTATAATTACGGCTTTTATAGCGCCTACTGCCGCCGGTTCAGGTATATCAGAGGTGAAGGCTTACTTAAATGGTGTTGATGCACCTGGAATCTTTACTGTACCAACTCTGTTTGTTAAGATTATTGGAAGCATTACGGCTGTTTCATCATCTCTTCTTGTTGGGAAGGCAGGACCTATGGTGCATACAGGTGCATGTGTAGCATCATTGTTGGGTCAGGGAGGATCCAAAAGGTATGGAATAACATGGAGATGGCTACGGTTTTTTAAGAACGACCGTGATCGACGAGATCTCATAGTATGTGGATCAGCAGCTGGGATTGCTGCTGCTTTCCGTGCTCCTGTCGGCGGTGTCTTGTTTGCTCTTGAAGAGATGGCATCTTGGTGGAGAACTTCCCTTCTATGGAGAGCTTTCTTTACAACAGCAACGGTTGCAATTTTCCTTCGAGCTATGATTGATGTATGTCTAAGTGGAAAATGCGGGCTATTCGGTAAAGGGGGACTGATAATGTTTGACGCTTATTCAGCTAGTATTTCGTACCATTTGGCAGATGTTCCTCTTGTGTTTATTCTTGCTATTATAGGAGGGTTACTCGGAAGCCTATTTAATTTTATGACCAATAAAGTTCTTCGCATGTACAATGTTATTAACGAGAAAGGCATCATTTGCAAACTTCTGCTTGCTTGTTTAATCTCCATCTTTACATCCTGTATTCTTTTTGGATTGCCATTGTTTGCATCTTGCCGACCTTGTCCTCCCGATGCAGTTGAACCTTGTCCAACAATAGGTCGATCCGGTATCTACAAGAAATTTCAATGCCCTCCTCATTACTATAACGGCCTTGCCAGCCTCATTTTTAACACAAATGACGATGCTATCAAAAACCTATTTAGCATGAATACCGACAACGAGTTTGAGTTTTCATCGATGTTGATTTTTTTCATCATATGTCTCTCTTTAAGTATCTTAAGCTGTGGAATTGTTGCCCCGGTTGGTATGTTTGTGCCAATTATCGTGACTGGTGCGTCTTATGGACGCATGGTTGGAATATTGGTCGGAAAACGGTCCAATCTTTGCCATGGCCTTTACGCTGTACTGGGTGCCGCTTCTCTTCTTGGTGGATCTATGAGGACGACGGTTTCTCTCTGTGTAATCATGCTAGAACTGACTAATAACTTGTTATTGCTTCCCTTAATAATGATGGTGCTTTTGGTGTCTAAGAGTGTAGCAAATGTTTTCAATGCAAATATTTATGACCTTATAATGAAAGCCAAAGGTTTGCCTTATTTAGAAACTCATGCCGAACCGTATATGAGGCAGTTGACAGTAGGCGATGTAGTCACAGGCCCACTTCAGGTATTTAACGGCATCGAGAGGGTGCGCAACATAATGTTCATCCTTAGAACAACAACACACAACGGATTTCCTGTTATTGACGAGCCTCCAGGTTTGGAAGCTCCAGTTTTATTTGGCATAATCCTTCGCGACCATCTTATCACATTGTTAAAGAAGAAAACTTTCTTGCCTACACCTGCGGCGAATAATTACGATGTATTGAGACAGTTTTCATCAGATGATTTTGCAAAGAAGGGTTCGACCGAACGCCTGAAGATCGAGGATATACACTTAACAGAGGAAGAGATGGGCATGTACATTGATCTACATCCTTTTACCAATGCCTCGCCTTACACTGTTGTGGAAACAATGTCATTGGCAAAGGCACTAATACTTTTTCGAGAAGTCGGTTTAAGACACTTGCTTGTGATACCCAAGATCCCCGGTATATCGCCCGTGGTAGGTATACTGACGCGGCACGATTTCATGCCAGAACATATATTGGGAATGCATCCTTTTCTGGTAAGAAGCAGATGGAAAAGATTAAGATTTTGGCAAACTTTTCTAGAAAAAATTCTTTCTGGCCTGTAA 2334 0.4147 MSNNDLPKGESASLIRQPLLSSSQRSIVNSTSQVAIVGANVCPIESLDYEIFENEFFKQDWRSRGVVQIFQYICMKWLLCLMIGVIVGFIGFCNNLAVENLAGIKFVITSNMMLQRRFLLAFVIFFASNLILTLFACIITAFIAPTAAGSGISEVKAYLNGVDAPGIFTVPTLFVKIIGSITAVSSSLLVGKAGPMVHTGACVASLLGQGGSKRYGITWRWLRFFKNDRDRRDLIVCGSAAGIAAAFRAPVGGVLFALEEMASWWRTSLLWRAFFTTATVAIFLRAMIDVCLSGKCGLFGKGGLIMFDAYSASISYHLADVPLVFILAIIGGLLGSLFNFMTNKVLRMYNVINEKGIICKLLLACLISIFTSCILFGLPLFASCRPCPPDAVEPCPTIGRSGIYKKFQCPPHYYNGLASLIFNTNDDAIKNLFSMNTDNEFEFSSMLIFFIICLSLSILSCGIVAPVGMFVPIIVTGASYGRMVGILVGKRSNLCHGLYAVLGAASLLGGSMRTTVSLCVIMLELTNNLLLLPLIMMVLLVSKSVANVFNANIYDLIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQVFNGIERVRNIMFILRTTTHNGFPVIDEPPGLEAPVLFGIILRDHLITLLKKKTFLPTPAANNYDVLRQFSSDDFAKKGSTERLKIEDIHLTEEEMGMYIDLHPFTNASPYTVVETMSLAKALILFREVGLRHLLVIPKIPGISPVVGILTRHDFMPEHILGMHPFLVRSRWKRLRFWQTFLEKILSGL* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0837 777 ProSiteProfiles CBS domain profile. 693 754 IPR000644 -
Psa4g0837 777 Gene3D - 567 746 IPR046342 -
Psa4g0837 777 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0837 777 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0837 777 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0837 777 PRINTS Chloride channel signature 465 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0837 777 PRINTS Chloride channel signature 497 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0837 777 PRINTS Chloride channel signature 515 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0837 777 PRINTS Chloride channel signature 553 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0837 777 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa4g0837 777 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa4g0837 777 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa4g0837 777 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa4g0837 777 PRINTS Plant CLC chloride channel signature 417 433 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa4g0837 777 PANTHER CHLORIDE CHANNEL PROTEIN 13 768 - -
Psa4g0837 777 SUPERFAMILY CBS-domain pair 569 744 IPR046342 -
Psa4g0837 777 SUPERFAMILY Clc chloride channel 54 568 IPR014743 -
Psa4g0837 777 CDD CBS_pair_voltage-gated_CLC_euk_bac 569 746 - -
Psa4g0837 777 Pfam Voltage gated chloride channel 133 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0837 777 Gene3D Clc chloride channel 68 566 - -
Psa4g0837 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 13 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0837 Psa-Chr4 52782664 52787638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0837 6 764 Ion Channels AT5G33280 72.727 0.0 1117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0837 K05016 - gmx:100817901 1213.36