Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0821 ATGGGAAGCAACAGTGCTGAGAAGGTCTCTAGCAATAGCAGCATTGGAAGTTCAGAAACAACTATTGAGATAAAGATCAAAACACTGGATTCACAAACTTATTCCCTCAAAGTTGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAAATTGCTTCTGTAACTGGAGTGATATCAGAACAACAGCGCTTAATTTGCCAAGGGAAAGTTCTCAAGGATGATCAACTACTGTCTGCCTACCATGTTGAAGATGGTCACACATTGCATCTGGTTGTGAGGCAACCTGATCTGCCACCTCCAGGAAGTCTACCCAATCACGCAGCGACTGAGCCAAATTCAAGCACAAGCCATAATCACAGTACCCAAGTCGCTCCAGGTGTCTTCATTGAAACTTTCAATGTTCCTGTTCACGGGGATGGAGTTCCGCCTGAAATAAATAGGATTGTTTCCGCTGTTCTTGGCTCTATCGCCGGACTTCCAAATTTCGCAAGTGGTGGTGAAGGGATTATTGTCAGGGAGCATGATTCCCAAGGCTTTGGAAGAACTTCAGATTCTAGTGGAGTATCAGACCCGAACCGTCCCCTACCTGATCAAACTGGTTTACGTAGTTTGTCGGATAGATTACGGAATACTTTTGGATTTCCGGCATCAGTTTCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAGTATCTAAGTCATATGAGCCATGAATTTGATATAATTGTCAGAGAAGGGGAGAATAATGCCCAAGCAGCTGAGGCTCATAGTAATGGTGAAATAGGATCTGCTTCTTCACGTCTGGGTTCAACACCGGAAAGTCTTTCATCACCCGCATCCTTGGCAGAAGTCTTGCGTTCTACCAGACGAATGATCACTGAACAAGCTGGGGAGTGCATACTTCAACTGGCAAGACAACTGGAGAATCAAGCAGATGTAACTGATGCACAATTGCGATCAACCGCCCAATCTAGGGCTTTGGCGACTGGAGTATTGTTTTACAACCTTGGTGCATTTTTACTTGAGCTTGGTCGAACAACCATGACATTGCGTATGGGTCAAACACCGTCTGAAGCTGTTGTTAATGGGGGACCCGCAGTTTTTATATCACCTACTGGTCCTAATCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCAAGCTTTGGTGCTGTCCCTGTAGGAGCTGCACAGTCTGACTCAAGTTTAGGTAGTGGACTTGGCTCAAATTTTTTCCCAAGGCGTATCGATATACAGATAAGACGAGGCACTTCAACAACCACACCAAATGCCAATCAAGAAGAGCGTGAGGATACACAATCTGCTTCAGTTCAAAGAAATCCAGCTGAAAGTTCTGCTAATCAAGCAAGCGCTAGGCGTCCCGATGCATCTACTGCTGGAGAGGCAGGAATAAGGATAGTGCCAATTAGAACCATGGTTGCAACAGTACCTGGTCCCTTGGGCCGTCCTTCAGAACCATCTGCTGCTAATTCTACAGGGCTTTACCATCCAGTTATCGGGAGATTTCAACGTGTAACTACAGGACATGCAAATAGTGAACAGGGATCTCAATCAGCAAATCAGCATCGTGCTGCACAGCATTCAACTCCTGAATCCACATTGTTAAGGCAAAGCGCAGAAGACTCTCCAAGGAATGGCACCTCATCAACTCCAAACACGAGACCAGAGCTATTTAGTTCTCGTGTTGTAAATATCAATATTCTGTCGGCTGGTGGGTCCCAAAACAATCAAGAGTCTGATAGACAGATGCCAAGCAATGTAATTCAGTTTTTAAGAACACTCTTTCCTGGTGGAGAAATTCACGTTGAGGATTCAAGCTCACAAGGAGCAAATGCGGGTTCCGCCGCAGTGCATGCTGCAACAACAGCGGCTGCTCCCCAAGTCCCTGAAGCTGAATCCCCTGTTAGTGATGGAGTATTTTTGTCAAATGTACTCCGTGAGATCATGCCGGTCATATCTCAACAAGTAGGATCTGAAAGAAATTCTTCTGATGATCAAATGGCTCAAGATTCATCGACCCAGGTTGAAACTAACGCTGGGACATCACGGAGACACAACGATTCTGAATCAAGCGCTCCAGATCCAAAACGCCAAAAGATGGAATGA 2151 0.4551 MGSNSAEKVSSNSSIGSSETTIEIKIKTLDSQTYSLKVDKQMPVPALKEQIASVTGVISEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSLPNHAATEPNSSTSHNHSTQVAPGVFIETFNVPVHGDGVPPEINRIVSAVLGSIAGLPNFASGGEGIIVREHDSQGFGRTSDSSGVSDPNRPLPDQTGLRSLSDRLRNTFGFPASVSLGSLQPPVIPDSLTTLSQYLSHMSHEFDIIVREGENNAQAAEAHSNGEIGSASSRLGSTPESLSSPASLAEVLRSTRRMITEQAGECILQLARQLENQADVTDAQLRSTAQSRALATGVLFYNLGAFLLELGRTTMTLRMGQTPSEAVVNGGPAVFISPTGPNHIMVQPLPFQPGASFGAVPVGAAQSDSSLGSGLGSNFFPRRIDIQIRRGTSTTTPNANQEEREDTQSASVQRNPAESSANQASARRPDASTAGEAGIRIVPIRTMVATVPGPLGRPSEPSAANSTGLYHPVIGRFQRVTTGHANSEQGSQSANQHRAAQHSTPESTLLRQSAEDSPRNGTSSTPNTRPELFSSRVVNINILSAGGSQNNQESDRQMPSNVIQFLRTLFPGGEIHVEDSSSQGANAGSAAVHAATTAAAPQVPEAESPVSDGVFLSNVLREIMPVISQQVGSERNSSDDQMAQDSSTQVETNAGTSRRHNDSESSAPDPKRQKME* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0821 716 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 1 716 - -
Psa4g0821 716 MobiDBLite consensus disorder prediction 257 283 - -
Psa4g0821 716 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 1 716 - -
Psa4g0821 716 MobiDBLite consensus disorder prediction 428 478 - -
Psa4g0821 716 Gene3D - 16 119 - -
Psa4g0821 716 MobiDBLite consensus disorder prediction 670 716 - -
Psa4g0821 716 PRINTS Ubiquitin signature 32 52 IPR019956 -
Psa4g0821 716 PRINTS Ubiquitin signature 53 73 IPR019956 -
Psa4g0821 716 PRINTS Ubiquitin signature 74 95 IPR019956 -
Psa4g0821 716 MobiDBLite consensus disorder prediction 180 202 - -
Psa4g0821 716 MobiDBLite consensus disorder prediction 702 716 - -
Psa4g0821 716 MobiDBLite consensus disorder prediction 258 283 - -
Psa4g0821 716 MobiDBLite consensus disorder prediction 523 573 - -
Psa4g0821 716 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Psa4g0821 716 SMART ubq_7 22 93 IPR000626 GO:0005515
Psa4g0821 716 MobiDBLite consensus disorder prediction 178 202 - -
Psa4g0821 716 MobiDBLite consensus disorder prediction 428 469 - -
Psa4g0821 716 MobiDBLite consensus disorder prediction 670 701 - -
Psa4g0821 716 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Psa4g0821 716 SUPERFAMILY Ubiquitin-like 11 111 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0821 Psa-Chr4 51415236 51425749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0821 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 3.20e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0821 K23390 - gmx:100783070 1026.93