Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0820 ATGGCTGCGGGAGTGTGGAGTATTGGAAATGGTATAAGCATTAAGGCTTGGAGTGATAAGTGGGTGGAACCAAGGAGATATATGATGGACCAATTGGATCAACAAGTACAGATTCCATCAGAGTTATTAGAAGCTAGAGTTAGTGATTTAATCAATAACAATGGAGAGTGGAACTGGAGCCTGTTGCAAGAGTGGATGCCGCACGAGATTTTAAATAAAATGCATTATATTCTTCCTCCTATAGTAGGAATGAAGATGGATGAATTTATAATTGCAACAAAAGGAGATGAATCTTTTTTGGTAGTCATCTTGTCAACGAATAGGAGGATCGTGACGATGGTGTTTGGAGTAAGGTGTAGAGGCTCAAGAATAACATATGGCAACATTTGTCTTGCAATTTGGAATTGGAGAAACAAGGAAGAGCATAATGAGGAGTTTATGATACCCTACGACCCGATAGAATGCATTTTGCAGAGGAAGAAGGAATATGAGGAAGTTATCCATATGCATAATGAGGTAAAAACCCGGGACAAATCAATCATGATGATAGAATGGACACCGCCGAAGAGCAATATGGTTAAGCTAAATGTTGATGGTGCGTGCAAGGATGAAACTGCTTCTGGTTGTGGTGGTTTGGAACTCACAGCTGAAAAAGGTTTGCAACATGTGGCGATAAATGTGGATTCGATAGAAGCGGTAACGACAATTGAAAAAGGGAACACGAAAATTGAGGAAGGGTTTCTCAACTCTCATCAAACTCGAGCAAGAGGGTTTTCGACGAGTGCGGCTAAACACTCTCTTCTCCTCTGCAAAATCCCAAACTCCACCATGGCTGAACAAACTGAGAAGGCTTATCTGAAGCAACCTAAAGTCTCGAAGAAATCTGGGAATGGGAAGAGGCCTGGTAAAGGTGGAAATCGATTTTGGAAATCTGTTGGTCTTGGCTTTAAGACTCCCAAAGAAGCCACTGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACCGGCAATGTTTCCATCCGGGGTCGTATTATAGCTGGAACTTGCCATAGTGCTAAGATGAATAGGACTATTATTGTTAGGAGGAATTATCTTCACTTTATTAAGAAGTATCAAAGATATGAGAAGAGACATTCAAACATCCCCGCTCATGTTTCACCTTGTTTCCGTGTTAAGGAAGGAGATCATGTTACTATTGGCCAATGCAGGCCACTCTCCAAGACAGTGAGATTCAATGTCTTGAAAGTGATCCCAGCTGGATCATCCAGTGGTGCAAAGAAGGCATTTGGTGGAATATGA 1299 0.4165 MAAGVWSIGNGISIKAWSDKWVEPRRYMMDQLDQQVQIPSELLEARVSDLINNNGEWNWSLLQEWMPHEILNKMHYILPPIVGMKMDEFIIATKGDESFLVVILSTNRRIVTMVFGVRCRGSRITYGNICLAIWNWRNKEEHNEEFMIPYDPIECILQRKKEYEEVIHMHNEVKTRDKSIMMIEWTPPKSNMVKLNVDGACKDETASGCGGLELTAEKGLQHVAINVDSIEAVTTIEKGNTKIEEGFLNSHQTRARGFSTSAAKHSLLLCKIPNSTMAEQTEKAYLKQPKVSKKSGNGKRPGKGGNRFWKSVGLGFKTPKEATEGTYIDKKCPFTGNVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFGGI* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0820 432 SUPERFAMILY Nucleic acid-binding proteins 341 420 IPR012340 -
Psa4g0820 432 MobiDBLite consensus disorder prediction 284 304 - -
Psa4g0820 432 PANTHER BNAA06G38660D PROTEIN 265 431 - -
Psa4g0820 432 PRINTS Ribosomal protein S17 family signature 361 384 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa4g0820 432 PRINTS Ribosomal protein S17 family signature 394 404 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa4g0820 432 PRINTS Ribosomal protein S17 family signature 404 411 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa4g0820 432 Pfam Ribosomal protein S17 347 415 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa4g0820 432 Pfam Ribosomal_S17 N-terminal 280 345 IPR032440 -
Psa4g0820 432 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 265 431 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa4g0820 432 Gene3D - 265 431 - -
Psa4g0820 432 TIGRFAM uS17_arch: ribosomal protein uS17 326 416 IPR028333 -
Psa4g0820 432 ProSitePatterns Ribosomal protein S17 signature. 394 406 IPR019979 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0820 Psa-Chr4 51407699 51412754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0820 277 432 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 84.906 8.28e-88 262