Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0794 ATGCCGGACGGAGATTCCTCCACCGCTGGCACCGTTCAACTTCCGATGGATACCTCGGGAGACCTATTCGATCATTCACAGTCCCTCAATCTTACCCTAGTCAACAATCATGAAGGCAAACTCAAAAAAGATCCTACGATAATTGCACGAGAGTACCAATTGGAGTTATGCAAAAAAGCTACGGAGGAAAATGTGATTGTTTATTTGGGAACAGGATGTGGGAAGACGCACATTGCTGTGTTGCTCATGCATGAAATGAGGCATTTGATCAAGAAGCCGAGTAAGGACGTATGTGTCTTTCTTGCACCTACCGTTGCTCTAGTTCATCAGCAAGCAAAGGTTATATCTGACTCTACTGATTTTGAAGTTGGAACTTACTGTGGGAGTTCCAAGCGCTCGAAATCTCGTCAACATTGGGAGGAGGAGATTGAACAGTATGAGGTTCTTGTTATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCATGAAGATGGAGATGATCGCACTTTTAATATTTGACGAATGCCATCATGCTCAAGTCAAAAGCAGCCATCCTTATGCTGAAATTATGAAAGTCTTTTACAAAAATAATTCCACAAAGGTTCCCCGAATATTTGGCATGACCGCTTCCCCTGTTGTAGGAAGAGGTGGTTCTACTGCAGCAAATCTACCGAAAAGCATCAATAGTCTCGAACAAATGCTTGATGCTAAGGTATACTCAGTTGAAGACACGGCATTGGAATCTTTTGTCACCACTCCTGCAGTTCAGATATATCATTATAGTTCGACTGCAAATATGGAATCTAACTTGTACTGGAAAATTGAAGAGATTAAATGCCAGTGCATAGAAACCCTTGGTAGAAGCATAGAAGATCACGAGAAACGGATGAGCACAAAGAAACTTCTCAATCGGGTGCACGATAATGTGGTCTTTTGTCTCGGGAGTCTTGGCATTTGGGGAGCGTTGCAGGCTAGCCGTATTCTTTTGAGCGGCGATCTTTCTGAGAGGCAAGCATTAGTTGAGGCAGAAGGAATTTCAAGTGACGAGTCTGTATGTGATAAATATCTTGCAAAGGTAGCTGAACTACTTACTTCCAAATGCATGACAGGTGACAGTGTTTCTGATCCATCTTCTTTGGAAATACTAAAGGAGCCTTTTTTCTCAGCAAAGCTCTTACGCCTCATTGGGATACTGACTAGTTTTAGGTTGCAACAGAACAGGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATACATACTACAGCAGCTCCAGCTTTTAAGACAATGGAAAAATGATTTTCTTGTAGGAGTCCATGCGGGAGTGAAGAGTATGTCACGGAAGACCATGAACACAATTGTTGAGAAGTTTCGCTCAGGAGAGTTAAATCTGTTGGTTGCCACCAAAGTGGGTGAAGAAGGTCTTGATATTCAGACATGTTGCCTTGTCATACGGTTTGATCTACCAGAAACCGTTGCAAGTTTTATACAGTCAAGAGGCCGTGCCCGTATGCCTCGTTCAGAATATGCATTTTTGGTTGACAGCGGCAATGAGAAGGAATTAGCCATAATTGATGGTTTTGAGAAAGATGAACTTCGAATGAATATGGAAATTGCTGTCCGAACATCCAGTGAGACACACGACATCCCTGTGGAAAAGATTTTCAGAGTTGATTCATCTGGTGCCTCAGTCAGTGCGGGATACAGTATCTCGTTGCTTCACCAGTATTGCTCAAAGCTTCCACATGATGAGTTCTTTGATCCCAAGCCAAGTTTCTTTTACTATGATGATTCAGGGGGAACTGTCTGCCAGATAACTTTGCCTTCCAATGCTCCGATACATCAAATTGTGAGCGCGCCACATTTGTCTATGGAAGCTTCAAAAAGAGACGCATGTCTGAAAACAATTGAAGAACTGTATAAATTAGGTTCTTTAAATGACTGTCTCTTGCCAAAGCAAAATGATGCAGAGCCAGAGAAGGATTTGGGCTCTTCTGATTCAGATGAGTGTGAAGATGACATTTCAAGAGGAGAATTATATGAGATGCTAGTTCCTTCTGCCTTTGGACAGTCATGGAAAAATGCGGAGAAAACTGTCCGTCTCAACTCCTACTACATTAAATTTTGCCCCACTCCGGAGGATAGGGTCTATAAAAAGTTTGGCTTGTTTATCATGACTCGTCTTCCAATGGAGGCAGAGAAACTGGAACTTGATCTTCATCTTGCTCACGGTAGATATGTGATGACAAAATTTATTCCATTTGGAGTTGTAGAATTCAACAATGATGAGATTAAGATGGCGGAGAATTTTCAAGAAATGTTCCTCAAAGTTATTCTTGATAGATTAGAATTTGTTTCTAATTTTGTAGAATTGAGTGCTGAATCTAACACACACACATCAACCTTCTACCTTTTGCTTCCAGTCATATTGAAAGAATATGATGACGTGATGAAAGTAGATTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATCTTCAGGCATCCAGAAGATACATTGGATAAAAAGGTTACCCCTTTGGATAATCATCTGCAACTTGCCAATGGTTACAAAAGTATTAGAGATATTGAGAATAGTTTAGTGTATACTCCACATACGAAGGTCTTCTTTTTTGTCACAAATATTATTTATGAAAAGAATGGATTCAGCCCTTTTAAAGATTCTGACACTTCAAGCTACGTGGATCACTTACATGAAAAGTTCTCCATTACTCTCAAATGCCCCGAACAACCACTTCTACAGGCAAAACCACTCTTCAATTTGCACAACCTGCTACACAATCGAAGGCATGGGGATGCTGAGCCACTTGAGCTAGAGGAATACTTTATTTATTTGCCTCCTGAGCTATGCGAGCTGAAAATAGTAGGCTTTTCAAAGGATATTGGTAGTTCAATATCTTTGCTACCTTCAATTATGCATCGTCTTGGAAACTTGCTGGTTGCCATTGAACTGAAGCACCAGCTATATTCCTCCTTCCCAGAGGCAGCTGAAATTAGTGCCCTTAGAGTTCTAGAGGCTCTCACCACCGAGAAGTGTCAGGAGCGTTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGGACGTCATTTTTTTCTCTTGCATGACAGCTTTCATGAAGGAGACCTTACCAGCAAGCGTTCCAATGTTGTTAATAACTCCAATTTGTTCAAGTTGGCTATTAGGCGCAATTTGCAGGTTTATATATTTGATCAGGCATTTGATCCCTTCCAATTCTATGCATTTGGCCGTTCTTGCCGAAGAGTTTGTACCGAAGAAACTGAAGACAGCATACACTTGTGTTTAAATTCTGGTGAGGAGAAAAGAAGTGTAACTCAACTCCAATGTAATAAAAATCACCATTGGTTGCACAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTGGGGGCATTCATAGTTGACAGTGGCTTTAAAGCTGCATTTGCCTTTCTTAAATGGATTGGCGTACAAGTAAATTTTGAAGCCTCACAAGTTGTTAATATTTGCACCGGAAGTGTTGACTATTTTCCTCTTTCTGCTGAAGTAGACATTCCTTCCCTTGAAGGTAGGTTAGGACATCACTTTGTTCATAAGGGTTTGCTTCTCCAGGCATTTGTACATCCTTCTTATAATAAGCATGGAGGAGGCTGTTATCAGAGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTACTTGATTACGTCATATCTATACTCAGCTTATCCCAAACTAAAGCCTGGCCAACTGACGGATCTGAGATCGTTGTCTGTCAATAATAAGGCATTTGCCTGTGTAGCAGTAGATCGTTGTTTTGATGAATTTCTTCTATGTGATTCAAGTGATCTGACCAAGGCAATAAAAAAGTATGCGGACCATATTAGAAGACCTATATCAGGCTGTGGCAATAATGGGGGGCCAAAAAGTCCTAAGGCCCTAGGTGATTTGGTTGAATCATGTATTGGTGCTGTTCTTCTTGATTCAGGATTTGATTTGAACAAAGTTTGGAATATTATGACTTCGTTCTTGGACCCAATCATGAAATTCTCATCAAGTTTGCAGCTTAGTCCTGTTAGAGATTTGCAAGAACTTTGCCAATCTCATAATTTGGAATTGCAGGTTCTGCCATCAAAACATGCTAAAACATTTTCAGTTGAAGCAAAAGTGATTGGGGACGGTGTATGTGAAAAAGTTTATGCAACCAGCCAAAATAAAAAAGAAGCTTCTAGAATCGCTTCACAGCTATTATTTTCAAAGTTGACGGCTCAAGGCTTGAAACTGAAGTCAAAAACTTTGGAAGATGTTATGAAATCAACATTTAAGACGGAACCAAAACTCATTGGCTATGATGAAACTCCCATTGATGTAACAAATACTACCACCATCGGACAAGTAATGGTTAATGGAGACCTACGTAACAAGGCTAACACAGAAATCCGCCCTATCCAGAAGGTATCTGCTGATGCATCCTCCTCGAATGTGAAACCTGTTGCCCAGCGGCTTCAATCTTCTCCTAAGGGAAAGCTTAGCGAAACCATTCGAAATCGTGATTGTGTTAGTGACTCATCGAAGACAGCAAAATCGCGATTGTATGAAATATGTCAATCTTATTGCTGGAAAGCTCCTTCATTTGAATGCTGCAAGGAAGAGGGACCAGACCACCTTAAGTTATTCACTTTCAAAGCGACGATGAAGATAGAAGAGGCTCCAGATACGGTTTTTGAGTTTATCGGGGAACCCTTGCCAAAGAAGAAAGATGCAGCAAATAGTGCAGCTGAGGGTGCATTATGGTACCTGCAAAAGGCAGGTTATCTGCATAATGCTGATGGTAATTGA 4899 0.4076 MPDGDSSTAGTVQLPMDTSGDLFDHSQSLNLTLVNNHEGKLKKDPTIIAREYQLELCKKATEENVIVYLGTGCGKTHIAVLLMHEMRHLIKKPSKDVCVFLAPTVALVHQQAKVISDSTDFEVGTYCGSSKRSKSRQHWEEEIEQYEVLVMTPQILLHNLSHCFMKMEMIALLIFDECHHAQVKSSHPYAEIMKVFYKNNSTKVPRIFGMTASPVVGRGGSTAANLPKSINSLEQMLDAKVYSVEDTALESFVTTPAVQIYHYSSTANMESNLYWKIEEIKCQCIETLGRSIEDHEKRMSTKKLLNRVHDNVVFCLGSLGIWGALQASRILLSGDLSERQALVEAEGISSDESVCDKYLAKVAELLTSKCMTGDSVSDPSSLEILKEPFFSAKLLRLIGILTSFRLQQNRKCIIFVNRIVTARSLSYILQQLQLLRQWKNDFLVGVHAGVKSMSRKTMNTIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPRSEYAFLVDSGNEKELAIIDGFEKDELRMNMEIAVRTSSETHDIPVEKIFRVDSSGASVSAGYSISLLHQYCSKLPHDEFFDPKPSFFYYDDSGGTVCQITLPSNAPIHQIVSAPHLSMEASKRDACLKTIEELYKLGSLNDCLLPKQNDAEPEKDLGSSDSDECEDDISRGELYEMLVPSAFGQSWKNAEKTVRLNSYYIKFCPTPEDRVYKKFGLFIMTRLPMEAEKLELDLHLAHGRYVMTKFIPFGVVEFNNDEIKMAENFQEMFLKVILDRLEFVSNFVELSAESNTHTSTFYLLLPVILKEYDDVMKVDWKTVKRCLCSPIFRHPEDTLDKKVTPLDNHLQLANGYKSIRDIENSLVYTPHTKVFFFVTNIIYEKNGFSPFKDSDTSSYVDHLHEKFSITLKCPEQPLLQAKPLFNLHNLLHNRRHGDAEPLELEEYFIYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHQLYSSFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVGRHFFLLHDSFHEGDLTSKRSNVVNNSNLFKLAIRRNLQVYIFDQAFDPFQFYAFGRSCRRVCTEETEDSIHLCLNSGEEKRSVTQLQCNKNHHWLHRKTIADVVEALVGAFIVDSGFKAAFAFLKWIGVQVNFEASQVVNICTGSVDYFPLSAEVDIPSLEGRLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRCFDEFLLCDSSDLTKAIKKYADHIRRPISGCGNNGGPKSPKALGDLVESCIGAVLLDSGFDLNKVWNIMTSFLDPIMKFSSSLQLSPVRDLQELCQSHNLELQVLPSKHAKTFSVEAKVIGDGVCEKVYATSQNKKEASRIASQLLFSKLTAQGLKLKSKTLEDVMKSTFKTEPKLIGYDETPIDVTNTTTIGQVMVNGDLRNKANTEIRPIQKVSADASSSNVKPVAQRLQSSPKGKLSETIRNRDCVSDSSKTAKSRLYEICQSYCWKAPSFECCKEEGPDHLKLFTFKATMKIEEAPDTVFEFIGEPLPKKKDAANSAAEGALWYLQKAGYLHNADGN* 1633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0794 1632 SMART PAZ_2_a_3 845 995 IPR003100 GO:0005515
Psa4g0794 1632 ProSiteProfiles Ribonuclease III family domain profile. 1206 1350 IPR000999 GO:0004525|GO:0006396
Psa4g0794 1632 SUPERFAMILY dsRNA-binding domain-like 1332 1441 - -
Psa4g0794 1632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 548 IPR001650 -
Psa4g0794 1632 SUPERFAMILY RNase III domain-like 1205 1369 IPR036389 GO:0004525|GO:0006396
Psa4g0794 1632 Gene3D - 1376 1443 - -
Psa4g0794 1632 SMART riboneu5 1018 1185 IPR000999 GO:0004525|GO:0006396
Psa4g0794 1632 SMART riboneu5 1221 1373 IPR000999 GO:0004525|GO:0006396
Psa4g0794 1632 ProSiteProfiles Ribonuclease III family domain profile. 1020 1165 IPR000999 GO:0004525|GO:0006396
Psa4g0794 1632 CDD RIBOc 1019 1175 IPR000999 GO:0004525|GO:0006396
Psa4g0794 1632 CDD DSRM_DCL_plant 1553 1622 - -
Psa4g0794 1632 ProSitePatterns Ribonuclease III family signature. 1241 1249 IPR000999 GO:0004525|GO:0006396
Psa4g0794 1632 SUPERFAMILY RNase III domain-like 1018 1179 IPR036389 GO:0004525|GO:0006396
Psa4g0794 1632 Pfam Ribonuclease III domain 1034 1165 IPR000999 GO:0004525|GO:0006396
Psa4g0794 1632 Pfam Ribonuclease III domain 1241 1350 IPR000999 GO:0004525|GO:0006396
Psa4g0794 1632 Gene3D paz domain 857 977 - -
Psa4g0794 1632 SUPERFAMILY dsRNA-binding domain-like 1544 1625 - -
Psa4g0794 1632 CDD DEXHc_dicer 47 246 - -
Psa4g0794 1632 CDD RIBOc 1222 1372 IPR000999 GO:0004525|GO:0006396
Psa4g0794 1632 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1546 1622 IPR014720 -
Psa4g0794 1632 Pfam PAZ domain 869 990 IPR003100 GO:0005515
Psa4g0794 1632 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1377 1443 IPR014720 -
Psa4g0794 1632 Gene3D - 386 547 IPR027417 -
Psa4g0794 1632 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 577 667 IPR005034 GO:0016891
Psa4g0794 1632 ProSiteProfiles PAZ domain profile. 869 969 IPR003100 GO:0005515
Psa4g0794 1632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Psa4g0794 1632 Pfam DEAD/DEAH box helicase 52 212 IPR011545 GO:0003676|GO:0005524
Psa4g0794 1632 PANTHER DICER-LIKE PROTEIN 4 46 1623 - -
Psa4g0794 1632 Gene3D - 49 302 IPR027417 -
Psa4g0794 1632 Pfam Helicase conserved C-terminal domain 398 511 IPR001650 -
Psa4g0794 1632 SMART ultradead3 45 243 IPR014001 -
Psa4g0794 1632 SMART DRBM_3 1378 1442 IPR014720 -
Psa4g0794 1632 SMART DRBM_3 1547 1621 IPR014720 -
Psa4g0794 1632 Gene3D - 1553 1623 - -
Psa4g0794 1632 SMART helicmild6 430 513 IPR001650 -
Psa4g0794 1632 PANTHER DICER-RELATED 46 1623 - -
Psa4g0794 1632 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1546 1621 - -
Psa4g0794 1632 Pfam Dicer dimerisation domain 577 662 - -
Psa4g0794 1632 Gene3D Dicer dimerisation domain 572 668 IPR038248 -
Psa4g0794 1632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 528 IPR027417 -
Psa4g0794 1632 SUPERFAMILY PAZ domain 863 967 IPR036085 GO:0005515
Psa4g0794 1632 Gene3D Ribonuclease III domain 1203 1375 IPR036389 GO:0004525|GO:0006396
Psa4g0794 1632 Gene3D Ribonuclease III domain 1014 1177 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0794 Psa-Chr4 49240642 49255174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0794 411 544 Eukaryotic Initiation Factors Gene Family AT3G19760 30.935 9.21e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0794 K11592 - gmx:100818702 2527.67