Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0777 ATGGGTTCAGCCTCTAGTCGTCTCGGGTCTCGTCCTTCTCCACCAAGGGTCAACAACAACCATCGCTTCAGATTCTCTTCCTTTCTCTGCGGCTCCTCCACCTCTCGCTCCATTTCTCAGATGGAAGAACATCAATATGAAGAGCTTCATGTTAATTCGGCTAGACATTTTAATGATGAAATTCAGAAAGTCTCTGATGAATCCTCGTTATCATGTACAGAAGAAGCTAGAATCAGTTGCTGCCCTCAGGCAGAAACTTCAATCTCAACCGATATGAGAACTGAGACTGAGTTCCGCAGGAATGCTACTGTTGAAGGTTCTTATGGAAATGTTGCAACGAGTAGTCAGAGGAATTGCTTGTCTGAACATAAGGAGCTAGTTTCTCCTTATCAGGTATGTGCTGGTCATAGTCATCGTGAATCATATAGTGATGGTAACAACACTGCTAGTACTTCATTTGTTGAACAACGGTCTTCAGATCCAGTCTCTGTAAATGATTTTACTAACATGGATAGAATCAATAATGTTGATGATCCAGTGTCTAGTGGTGTCTCTCGAATCTCTCATCATGAGACCGCGCACCCAAGGAGCTCAATCTCTCAAGAGCATGGAAATGCCAGTTCGGATGAAATTTCTGTTGAGATTGACACAAATGCAGGCATGTCTATCCATAGTTCTTCTAGTCATGTTGCTCAAGTGTCTAATGCACCACCAACTTCTCAAATTTCAGAAGATGAATCCCGTCGCGAAACAATACCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAATAGTGCAGGGAAATGATGGTATGTTTCAAGTCGATGTGGTCGCAATATCTTCCAACATTTTGTCTGGCAGCAATGCAGATGCGGATGATCATGATGCCAGAAGCAATGGTAGAAGATTGTTTTGGGATACTTTTTCACAACGTAGTTCTAGAAGGTTTGGTGATTCTCCAACCATCGTTATCTCCACGGGAGGTGCTGATGATTCGGGATCTCAAGATCGGTGGCAGGTTGATTTCGATGAGGATTTATCAAATGATGGGCTTGGACGTCCGCCCAGATATAGGGGCAGTAGAATTCGCAGATTGAGTGAAAGAGTGCGACACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGAGGCCTTGATGAGATTGGTCGGTTGAACTCTTCATGTCCATTAGGACTCCATGCAGACGGTATGTGCTCGTGCGAGTCATTCCCAGTGGCTGAAGAATCTAGCTCTCGGTCGAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTCTGTTTGAGGTTTTAGATGAAATCCACCGGCAACCTTCATCCCTTTCCCTCTCCACGGTCTCACTCCCTGCGCCTGAATCAGTTGTGGACTCTTTCCCTCTGAAGTCTCACAAAAAGGTTGATGCAGCTGATGGAGGCAATGATGCTGAACAATGCTACATATGCTTGGCGGAGTATGAAGATGGGGACCAAATACGAGTTCTTCCTTGCAAGCATGAATATCACATGTCATGTGTCGATAAGTGGCTGAAGGAAATACATGGGGTATGTCCTCTGTGTCGCGGACATGTTTGTGGAGGCTCGACAGAGCCGTCAGCTCACTCAGAAGCGCAGTCAATAGTTCAAATCTAG 1644 0.4519 MGSASSRLGSRPSPPRVNNNHRFRFSSFLCGSSTSRSISQMEEHQYEELHVNSARHFNDEIQKVSDESSLSCTEEARISCCPQAETSISTDMRTETEFRRNATVEGSYGNVATSSQRNCLSEHKELVSPYQVCAGHSHRESYSDGNNTASTSFVEQRSSDPVSVNDFTNMDRINNVDDPVSSGVSRISHHETAHPRSSISQEHGNASSDEISVEIDTNAGMSIHSSSSHVAQVSNAPPTSQISEDESRRETIPSGLGILVSNREIVQGNDGMFQVDVVAISSNILSGSNADADDHDARSNGRRLFWDTFSQRSSRRFGDSPTIVISTGGADDSGSQDRWQVDFDEDLSNDGLGRPPRYRGSRIRRLSERVRHSRSEIWERLRGGLDEIGRLNSSCPLGLHADGMCSCESFPVAEESSSRSSISRIVMLAEALFEVLDEIHRQPSSLSLSTVSLPAPESVVDSFPLKSHKKVDAADGGNDAEQCYICLAEYEDGDQIRVLPCKHEYHMSCVDKWLKEIHGVCPLCRGHVCGGSTEPSAHSEAQSIVQI* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0777 547 MobiDBLite consensus disorder prediction 180 208 - -
Psa4g0777 547 Pfam Ring finger domain 482 525 IPR001841 -
Psa4g0777 547 SUPERFAMILY RING/U-box 471 528 - -
Psa4g0777 547 ProSiteProfiles Zinc finger RING-type profile. 483 525 IPR001841 -
Psa4g0777 547 MobiDBLite consensus disorder prediction 225 242 - -
Psa4g0777 547 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 542 - -
Psa4g0777 547 SMART ring_2 483 524 IPR001841 -
Psa4g0777 547 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 542 - -
Psa4g0777 547 MobiDBLite consensus disorder prediction 225 250 - -
Psa4g0777 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 529 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0777 Psa-Chr4 48245006 48248551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0777 394 529 C3H Transcription Factor Family AT5G45290 52.318 1.78e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0777 - - gmx:100783722 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0777 4 48245006 48248551 Psa4g0777 4 48245006 48248551 ECH