Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0770 ATGGCTTTTCACGACCATCTCCAACAGGAAATAGCGTTCCAGCGATTCACGGAGGAAGAAGACGAAGATAGAGTACCATGGATGAGCAACAGCGTAAACGCGCGTCAACAGAATTTCATGCACTTGGAACCGGAGAGGAGAGAGAAAAGCATGGATCGGAACCGGAGCGAGAGCAATTGCGAAAGAGAAGAGTTAAGCGAATACAAAGCGGAGATATTAGGTCATCCACTTTACGATCAGTTGTTATCGGCTCATGTTTCGTGTCTCCGAATCGCAACTCCGGTGGACCAGCTTCCGAGAATCGATGCTCAGCTTCAACAATCGCAGCGCGTTCTTCACAAATACTCTTCCATTGGAATTGGAAACATGGATCCCAAGGAGCTTGATCACTTTATGACGCATTATGTTCTTTTGCTGTGCGCTTTCAAAGAACAGCTGCAACAACATGTCCGCGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTTGAGCAATCTCTGCAAAGCTTGACAGGTGTATCTTCGGGTGAAGGAACGGGAGCAACCATGTCAGACGATGAAGATGAGCAGACAGAAAGTAATGCCAAGTTGTACAACGAAGGAAGCAGCCTTGATGGCATTGATACTCTTGGATTTGGTCCTCTTGTCCCCACTGAGACTGAAAGGTCTCTGATGGAGCGTGTTAGGCTTGAACTCAAGCATGAGCTAAAACAGGTAGGTATATAA 729 0.4719 MAFHDHLQQEIAFQRFTEEEDEDRVPWMSNSVNARQQNFMHLEPERREKSMDRNRSESNCEREELSEYKAEILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLHKYSSIGIGNMDPKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSSGEGTGATMSDDEDEQTESNAKLYNEGSSLDGIDTLGFGPLVPTETERSLMERVRLELKHELKQVGI* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0770 242 Pfam KNOX2 domain 125 172 IPR005541 GO:0003677|GO:0005634
Psa4g0770 242 SMART KNOX1_2 66 110 IPR005540 GO:0003677|GO:0005634
Psa4g0770 242 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 21 239 - -
Psa4g0770 242 SMART KNOX2_2 117 173 IPR005541 GO:0003677|GO:0005634
Psa4g0770 242 Pfam KNOX1 domain 68 109 IPR005540 GO:0003677|GO:0005634
Psa4g0770 242 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 21 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0770 Psa-Chr4 47890822 47895002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0770 48 239 Homeobox Transcription Factor Family AT5G11060 73.469 2.69e-93 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0770 - - gmx:100803673 358.221