Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0767 ATGAGTGAAAAAGAAGAGAGAATGTTTGGCCATGATGCTGAGAAAATCCAAGAGCTTCAGTTATTCACGACACCACCGTTGCGACTCCAAACACTGAACACTAATACCACCACAAACAACAACGACCATGAACTACCCTCCACTATTGTGCGCCGTCCCCGAGGGCGTCCACTTGGCTCCAAGAATAAGCCTAAGGCACCTATCATAGTAACATCTGAAAGCCCTAATGCACTATGTTCTCATGTGCTTGAGATCGCTAATGGAGTTGATGTGTCAAAAAGTCTATTTGATTACGCTCGTCGTCAACGAAGGGGGGTCTCCATCCTCAATGGAAATGGAGTGGTGACGCGTGCCAGGCTTCGTCAACCCACGGGAAAAATCATAACCCTTCAAGGGAAGTTTGATATTCTTTCGATATATGGGACAATTTTCCCGCCACCAACACCTACGTTTGTTGGAGGATTAAGAGTTCACTTATCAGGAACGAAAGGACATGTCATTGAGGGTAGTGTGATTCCTCCATTGGTGGCTTCAGGTCCGGTGACTTTAACAGCTGCTTCCTTTGCAAACATTGCTCTTGAAAAGATTTCTTCTGTGGCGAATGATTAG 609 0.4565 MSEKEERMFGHDAEKIQELQLFTTPPLRLQTLNTNTTTNNNDHELPSTIVRRPRGRPLGSKNKPKAPIIVTSESPNALCSHVLEIANGVDVSKSLFDYARRQRRGVSILNGNGVVTRARLRQPTGKIITLQGKFDILSIYGTIFPPPTPTFVGGLRVHLSGTKGHVIEGSVIPPLVASGPVTLTAASFANIALEKISSVAND* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0767 202 ProSiteProfiles PPC domain profile profile. 75 202 IPR005175 -
Psa4g0767 202 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 35 196 - -
Psa4g0767 202 SUPERFAMILY AF0104/ALDC/Ptd012-like 77 195 - -
Psa4g0767 202 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 189 IPR005175 -
Psa4g0767 202 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 196 IPR014476 GO:0003680
Psa4g0767 202 Gene3D - 80 199 - -
Psa4g0767 202 CDD DUF296 81 188 IPR005175 -
Psa4g0767 202 PIRSF ESCAROLA 3 198 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0767 Psa-Chr4 47684259 47685008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0767 26 196 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 46.448 8.26e-49 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0767 - - cam:101492608 191.43