Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0748 ATGGCACTTTGTAGTGGTAGTTTATGCAAGCCTCAAATCGCATTACTTCCCCGTTCTGTAAATTTGAAGCAATCACTGTCGGCAATCACGTTTTCAACTCCAACAAAATTTCCAACCACTCTTTCACTATCAATTTCTGCTTCCAACATTCTTCGCAATGCGCCTTATCCACGGTTTCGCTGCACAGCCGATTCCACCTCCTCCACGTCTTCTGTCGAATGTAATATGCCTTCTTCAACCAAAATCTTCATCAAAGGGCTTCCCCTCTCAACCTCTGAAGTGGATTTAGCCAAAGTGTTTTCCATGTTTGGTGAAGTTACTCGAGTCAAGCTTTTGATAGATAAAGATTCCGGAGAGTCTCTAGGATTGGCATACATTTGGTTTGTCGATGATGAGTCGGCACAATCGGCTACAAAAGAGATGAATGGAAAGTTTTTCGATGGCAGGTTTATTTATGTTACAATCGCAAAGCTTGGATCATCAAAAAAATTTAAGAAGACAAGAGCCTACAAATTCTAA 519 0.4104 MALCSGSLCKPQIALLPRSVNLKQSLSAITFSTPTKFPTTLSLSISASNILRNAPYPRFRCTADSTSSTSSVECNMPSSTKIFIKGLPLSTSEVDLAKVFSMFGEVTRVKLLIDKDSGESLGLAYIWFVDDESAQSATKEMNGKFFDGRFIYVTIAKLGSSKKFKKTRAYKF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0748 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Psa4g0748 172 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 25 172 - -
Psa4g0748 172 SUPERFAMILY RNA-binding domain, RBD 66 165 IPR035979 GO:0003676
Psa4g0748 172 SMART rrm1_1 81 154 IPR000504 GO:0003723
Psa4g0748 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 151 IPR000504 GO:0003723
Psa4g0748 172 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 25 172 - -
Psa4g0748 172 Gene3D - 59 170 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0748 24 156 Eukaryotic Initiation Factors Gene Family AT3G11400 32.593 1.45e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0748 - - mtr:MTR_4g117350 196.438