Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0746 ATGCTTTTAAAACATTTTGCTTTCTTCCTTGTTGTCCCTATCTTCTTCCCTCTCACGTCTCACTTATTTGCAAATTCAACTTCCTGGGTAAAAGCAGGTTACTACTATTCCGGCAATGAAATTGCAGCTTCAGAAATTAAATCAACACTTTTCACACACCTCTTATGTGCTTTTGCTTTTATAAACTCCACGAACTATAACATCTTTATAAACTCTTCTGAAGAACACAAATTCTCCACCTTCACCAACACAGTAAAGCTTCAAAATCCATCTGTTATAACTCTTCTATCAATCTACACTGGAAGAGAAAACTCTTCACTTTTTAACTTAATGATAAGCCAATCTTCTTACAGAAAATCTTTCATTGATTCTTCCATCGAAACAGCCAGAGAATATGAGTTTCAAGGCATAGACCTTCGTGGAGTCTCACCAAAGCAAGGTAAAGAACTTGCAAATTTTGCAACCCTTTTGAAAGAGTGGCGAAACGCGATAACTTCTGAGGCAAGAAATTACACGAGTAGAATAGACTTAGTGTTGGTGATGGCAGGTTATTATCTAAAAGCTTCAGATTCATTTAGTTATCCTTTTGAATCAATGCAGAAGAATTTGGATTGGGTTCATTTTGTTGCATATGATTACCATCTTCCTGAAAAGGACAGTGTCACAGGTTTTCATGCAGCTTTATATGGTTCATCTGGTTGGGAAAATACTGACTCTGGTATCAAAGAGTGGAGAAAGAGAGGATTTTCTTCTAACAAACTTGTAATAGGTTTACCTTATCATGGATATGCTTGGAAACTTGTGGAACAAGGTGAAGGTGGTGTTGGAAAACCAGCTTCTGGTCCATCTATTACTAAGGATGGTTCTATGGGTTATAAGTGGATAAAAAGTTTCATTAAAAGCTTTGGATATGGAGTAGTTTCAAGCTATAATGATACTATTATAGTGAATTATTTCATTGTTGCTTCCACTACTTGGGTTAATTTTGATGATGTGGAAGCTATTAAAGAAAAAGTTTCTTATGCAAAGAAAAATGGATTACTTGGTTACAATGTGTTTCAAGTTGGGAATGATGACAATTGGGTCCTTTCAATGGCAGCAGCTCAAGAACTAGATGATCATCATCATAATAAAAGATTGTTGATAATTCTTCTGCTTACAATTATGACTGCTGCTCTTCTCATGGGAACAGTATTTTGTTACTACTACTACCAAAGAACCATAACCGTTATTACAAAAATGATACACAAATTGAAGATATATTTATCCGCAGCTGAAAAAGATGTTGACCAAGATTCTTATGATTTGATAGTATTTGGCTATCTCACAATTAAAGTAGCAACAGATAACTTCTCAACAGAAAATAAGCTCGGAGAAGGTGGATTTGGTGCAGTGTACAAGGGAAAATTACGAAAGGGACAGGAAATAGCTGTTAAAAGACTCTCAGAAAACTCGAATCAAGGACTTGAAGAGTTCAGAAATGAGATCACACTCACTGCAAGATTGCAACATGTGAATTTAGTTAGACTTTTGGGCTACTGCACAAAAAGGAATGAGAAGCTTCTCATCTATGAATATCTCCCAAATAAAAGCTTAGATCATTTTCTCTTTGATCCAAGGAAATCAATTCTTCTAGATTGGAGGAAGCGTGTGAATATCATTGAAGGAATTACTCAAGGCCTTGTTTATCTCCAAGAGTACTCAAATTTTACTATAATCCACCGAGATCTTAAAGCTAGTAATGTTTTGTTAGACCATGAGATGAATCCTAAGATAGCCGATTTTGGTCTCGCTAGAATTTTTGGGAAGAATGAACTTGAAGCAAATACAAGCAGAATCGTGGGGACATATGGATCCGTACCTCCCGAGTATGTCAGAAAAGGCATATACTCGCCCAAGTATGATGTTTATAGTTTTGGAGTCCTTCTCTTGCAGGTCATAAGTGGGAAGAGATCTTCACATTATTACGGCTCACATGAAAATATGAACCTTTTGGAATACGCGCATGAGCTGTGGATGGAAGGAAGAGGTGATGAGTTTTTGGACCCTTCATTGGATGATTCAACATGTCATTGTAAAATCATGAGATGCATGCAGGTTGGTCTTTTGTGTGTTCAAGAGAACTCAGCAGATAGACCTTCCATGCTAGAAGTTGATTCACTGCTCAAGAATGAAGTCACACATGTTGGTACTCCCAACATGCCAGCTTTTTCGATGAAAAAACACGAAGATGACAAGGGAGATACAATGAATGATGTTACAATTTCTGAGATGGTAGCAAGATAA 2286 0.367 MLLKHFAFFLVVPIFFPLTSHLFANSTSWVKAGYYYSGNEIAASEIKSTLFTHLLCAFAFINSTNYNIFINSSEEHKFSTFTNTVKLQNPSVITLLSIYTGRENSSLFNLMISQSSYRKSFIDSSIETAREYEFQGIDLRGVSPKQGKELANFATLLKEWRNAITSEARNYTSRIDLVLVMAGYYLKASDSFSYPFESMQKNLDWVHFVAYDYHLPEKDSVTGFHAALYGSSGWENTDSGIKEWRKRGFSSNKLVIGLPYHGYAWKLVEQGEGGVGKPASGPSITKDGSMGYKWIKSFIKSFGYGVVSSYNDTIIVNYFIVASTTWVNFDDVEAIKEKVSYAKKNGLLGYNVFQVGNDDNWVLSMAAAQELDDHHHNKRLLIILLLTIMTAALLMGTVFCYYYYQRTITVITKMIHKLKIYLSAAEKDVDQDSYDLIVFGYLTIKVATDNFSTENKLGEGGFGAVYKGKLRKGQEIAVKRLSENSNQGLEEFRNEITLTARLQHVNLVRLLGYCTKRNEKLLIYEYLPNKSLDHFLFDPRKSILLDWRKRVNIIEGITQGLVYLQEYSNFTIIHRDLKASNVLLDHEMNPKIADFGLARIFGKNELEANTSRIVGTYGSVPPEYVRKGIYSPKYDVYSFGVLLLQVISGKRSSHYYGSHENMNLLEYAHELWMEGRGDEFLDPSLDDSTCHCKIMRCMQVGLLCVQENSADRPSMLEVDSLLKNEVTHVGTPNMPAFSMKKHEDDKGDTMNDVTISEMVAR* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0746 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672|GO:0006468
Psa4g0746 761 CDD STKc_IRAK 457 724 - -
Psa4g0746 761 Gene3D - 260 329 IPR029070 -
Psa4g0746 761 SMART 2g34 29 358 IPR011583 GO:0008061
Psa4g0746 761 Gene3D Transferase(Phosphotransferase) domain 1 527 733 - -
Psa4g0746 761 Pfam Protein tyrosine and serine/threonine kinase 453 719 IPR001245 GO:0004672|GO:0006468
Psa4g0746 761 Gene3D Phosphorylase Kinase; domain 1 425 526 - -
Psa4g0746 761 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 19 748 - -
Psa4g0746 761 SMART serkin_6 451 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0746 761 Pfam Glycosyl hydrolases family 18 34 358 IPR001223 GO:0005975
Psa4g0746 761 ProSiteProfiles Protein kinase domain profile. 451 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0746 761 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 374 IPR001223 GO:0005975
Psa4g0746 761 Gene3D Glycosidases 44 360 - -
Psa4g0746 761 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 748 - -
Psa4g0746 761 SUPERFAMILY (Trans)glycosidases 30 364 IPR017853 -
Psa4g0746 761 SUPERFAMILY Protein kinase-like (PK-like) 435 720 IPR011009 -
Psa4g0746 761 ProSitePatterns Protein kinases ATP-binding region signature. 457 479 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0746 Psa-Chr4 46023316 46029311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0746 425 744 Receptor kinase-like Gene Family AT4G11480 50.156 5.28e-109 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa4g0746 Glyco_hydro_18 1.6e-52 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0746 - - aprc:113847882 1125.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0746 4 46023316 46029311 Psa4g0746 4 46023316 46029311 ECH