Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0694 ATGGGAAGATATCGTAGCCGTAGCAGAAGTTTCAGCCCTCGCCGCCGTAGCAGAACCCCACCTCGCGGTCGCAAGCGTTATGATGATGATCGCCATCCTGAAACCAGGTCTCGCAGAGACCGTCGTTCTCCTCTCCCTTCTGGCTTACTCGTTCGTAATCTCCCCCTCGATGCTAGACCTGAAGATCTTAGGGGGCCATTTGAACGCTATGGTCCTGTAAAGGATGTTTACCTTCCTAGAAATTATTACACTGGGGAACCTCGTGGCTTTGGATTTGTGAAATATCGATATGGCGAAGATGCGGCAGAGGCAAAGCAACATCTGAATCACAGTGTCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACCCCTCAAGAAATGCGTGTCACTTCTCATGGAAGTAGCCGAAATGGAGGTGGTAGCAGAAGGAGAGCTCGGTCAAGATCTCCACGGCGTCGTTATCGATCCTACTCTAGGTCTCCATCACCTGCCAGGGACAATTCAAGGGATGACAGAGGTAGGGATGGTTATTCTCCAGAGCGATCAAGATCTTATTCTAGGTCTGTTTCTCCCGGTGGTCGGAAGGAAGACAAGATGTCCCCTCGTGCCTCCCCTGGTGGTAGGAAGGACCGCAGGGGGTCCTCTCGTGCCTCTCCGGATGATGGGAAGGATGACAGGAGGAGCCCTCGTGCCTCTCCCGGTGTTGGGAAGGATGACAGGAGGTCCTCTCGTGCCTCTCCAGGTGGTGGGAAGGACGACAGGATGTCACCTCGTGCCAGGGAGAATGGTCGAAGTCCAAATGTTAAGGAAGATCAGGCACCTACCAGATCTGAGAGCCCTAGGGACAAAGATCACAGTCCTTCAAGGTCTCGCTCACGGTCATACAGGAGACTCTGA 915 0.5257 MGRYRSRSRSFSPRRRSRTPPRGRKRYDDDRHPETRSRRDRRSPLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHSVIGGREIRIVFAEENRKTPQEMRVTSHGSSRNGGGSRRRARSRSPRRRYRSYSRSPSPARDNSRDDRGRDGYSPERSRSYSRSVSPGGRKEDKMSPRASPGGRKDRRGSSRASPDDGKDDRRSPRASPGVGKDDRRSSRASPGGGKDDRMSPRARENGRSPNVKEDQAPTRSESPRDKDHSPSRSRSRSYRRL* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0694 304 MobiDBLite consensus disorder prediction 170 187 - -
Psa4g0694 304 MobiDBLite consensus disorder prediction 125 304 - -
Psa4g0694 304 MobiDBLite consensus disorder prediction 196 273 - -
Psa4g0694 304 Gene3D - 2 136 IPR012677 -
Psa4g0694 304 MobiDBLite consensus disorder prediction 1 48 - -
Psa4g0694 304 MobiDBLite consensus disorder prediction 22 45 - -
Psa4g0694 304 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 228 - -
Psa4g0694 304 MobiDBLite consensus disorder prediction 280 297 - -
Psa4g0694 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Psa4g0694 304 MobiDBLite consensus disorder prediction 1 21 - -
Psa4g0694 304 SUPERFAMILY RNA-binding domain, RBD 49 152 IPR035979 GO:0003676
Psa4g0694 304 SMART rrm1_1 48 121 IPR000504 GO:0003723
Psa4g0694 304 MobiDBLite consensus disorder prediction 145 161 - -
Psa4g0694 304 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 228 - -
Psa4g0694 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0694 Psa-Chr4 43703407 43707282 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0694 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 2.08e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0694 K12900 - gmx:100788749 257.299