Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0682 ATGGCATCTCCACAGAATGTCGAGATGGAGGCTGCCAATTTTCTGCATAAACTTATTCAAGATTCTAAAGATGAGCCAGCCAAGCTGGCTACTAAACTATATGTGATACTTCAACATATGAAATCGAGCGGGAAGGAAAATTCAATGCCATTTCAAGTTATATCTAGGGCGATGGAGACTGTCATCAACCAACATGGTCTTGATATTGAAGCATTAAAGTCATCACGTCTTCCTTTGACCGGTGGTCCTCAAATAGGATCTTCTTCACAAGCAGCGGGTGGTGCAAATGATTCGAGAGCAGGCTTGGCTGAGAATGAGGCTCCCAAAATGGAACCCTTTGCTGCTGGTCGACCACCAATTGCTCCAACTGGCGGAGCTCCTGAATATTATCAAGGAACTGTAGCTCAGAGGAGTAATCAATCTTTTGATCAAGGAAGTCCAACTAGTTTGGATTCTAGGTCTGCTAACTCACAGTCACAAGACAGACAGGTGAATCAAAAGGATGGTAAGAAAGCTATCCCAAAAAGAAAGAGGGGAGATTCAACATCACCTGGGGAAATGCATGTTGACAGTTCTTCTCTAGTAGAACCTCGCAACACTGGTGTTAATTCAAGGAAGGGGAAAATGACCAAGGCCGAACCATCAGATGGTATTCAAGCTAAAAGTGGTGAAATGACAAACTTCAATGTGGCTCCAAATAATACTCAAATGGAAAATATTTCGACTTTTTCTGGTAACATGAAAACAATGATTAGGGCAAACCAAGAAGGTCATCTTTTATTGGCAAAGCAAACTGATTTGACAAAGATTGGCAATCCAATGGCGCGGGCTCCAAATTCAAAGTATCCAGAAGACGTGGAAGTTTCCTCTGCACATATTGCTCCAGGAAAGCAGCAGCAAGGTGCTTATGCTAGGGTTCATGGAGGGATGGCGGTTCCTGCTAATGTGTCTCCAATGAACGAACCAGTTATCTCAAGTTCAATGCAATATGGTGGTCCTCTTGATCGTGATGGGGGGAGCTCAACTACTTTGTCTGATGGACATAAAATATCTCAGACTGGCAGGCAAAATAGTGGCTCAGAAATGACTATGCTTAGACAAGGTGTTCACCCTAGAGATACAGGAAAATCCCCAGTTCCTGCAGCAGCTGCATCATCTACTATGCCTTTCAAAGAAAACCAGTTGAAACAGCTTCGAGCTCAGTGCCTTGTTTTTCTAGCATTTAGAAATGGTTTACCGCCAAAGAAACTACATCTTGATGTCGCATTTGGAACCTTCTTTTCTAGAGAAGATGGTTCTAATAAGGATCTGAATGAACCCAAAGGAAAATCACAGTCTTTTAATGAACCTGGTAACACACCAGGGGTCATAGTGCCATTTGGAAGTTCGAGCAATCTGAGACAGACTGATAAAAACCCCTCAGGGTCCTCTTCTGCTGGAAAATTTATAGAGGCTGAATCTTTGTCGAAGGGAACTGAGAGCCCAAGAATGTTAGAAGATAAAGGTAACCTTCATTCTGACATCCAGACACCTTCAGAAGACAGGAAACATCTAGCCGCAAAAAGAGATGTTGAAAGACGAAACCAAGAGAGAATGGCTGCCCAATCTTCTTCGGCCACTCAATATCAGCAGAAAGATTCTTCAAGTACAAGGGGTATTGTAGTTGGTAACAGTCATTTGAATGATGGTGACAATGGTATCCTGACTGCTGGAAGGGCTAACCAACATTCTGTTATAGGCCCAAATAACTGGACTGGTTCAAATCCACACGTGTCTCCTATTCAACATGAGTTGCCTATAGAAAGAAGAGAAAACATTCCTAGTCAGTTTCAGAATGTTAGTAACAATTCTGGTTCCTGGAATCACAATTCTATTAATCAATTGACTTCTTATTCTTTAAAAGAGCACTGGAAACCTGTTCCCGGGATTGATAGCAATTCCCATGGAGTAACTGTGATGAAGGATGGAAATGTATTGGGCAAAAACGTTTCTGCAGAGCAAGGAGGGAATGAGAGGTTAGTATCAACTGATTTTCCGTCTTCTAAAAGATTTACAATGTCAGAGAGATGTATTATGGATCGGCAGAGAAAGAGGCTTCTAGCTGGCCAAAATTGGGTGCAAAAACAGCAGAAAGCAAAGGAAAGAATGACTAAATGCTTTCACAAGTTAAAGGAAAATGTGAGCTCATGCGAAGATATTTCTGCTAAAACAAAAAGTGTCATAGAATTGAAAAAACTTCAACTATTAGAGCTCCAACGCCGACTTCGGAGTGATTTTCTGAACGATTTTTCTAAACCAATTACAAATGAGATGGAACATTTGAAATCAATTAAGAAACATAGGCATGGTAGGAGAGTCAAACAACTTGAAAAGTATGAGCAGAAAATGAAGGAAGAGCGACAGAAACGGATTCGTGAGAGGCAGAAGGAGTTTTTCAGTGAGATAGAAGTTCACAAGGAAAGACTTGATGATGTATTCAAAATCAAGAGAGAACGGTGGAAGGGTTTCAATAAATATGTAAAGGAGTTCCATAAAAGAAAAGAACGTATTCATCGTGAGAGAATTGATCGAATTCAGCGGGAGAAGATTAATTTGCTAAAAATAAACGACGTCGAAGGTTATCTTCGAATGGTACAGGATGCAAAATCAGATCGCGTGAAGCAACTTCTTAAAGCAACTGAAAAGTACCTTCAAAAGCTTGGGTCCAAGCTACAGGAAGCAAAGACTGCTGCAGGACGTTTAGGGCTAGATGTTGATGAGGCAGGAAGTACCAATTTTCTTGAGAATAGTGAAACTACTTTGGTTGACGAGGATGAAAGTGATCAGGCAAAGCATTACATGGAAAGTAACGAGAAGTATTATAAGATGGCCCACAGTGTAAAGGAGAGCATAGCAGAGCAGCCAGCTATTCTGCATGGTGGAAAATTAAGGGAATATCAAATGAATGGTCTGAGGTGGTTGGTTTCACTATATAACAATCATTTGAATGGAATCCTTGCCGATGAAATGGGCCTGGGTAAAACAGTTCAGGTGATTTCTCTAATTTGCTACCTGATGGAAACCAAAAATGATAGAGGACCATTCCTTGTTGTCGTACCCTCTTCAGTTCTACCCGGTTGGGAGTCAGAGATAAACTTTTGGGCTCCTAGTATTCACAAAATTGTCTATGCTGGACCGCCGGAGGAGAGACGTCGGTTATTCAAGGAAAGGATTATTCACCAGAAATTCAATGTTCTTTTGACAACATATGAATATCTGATGAACAAGCATGATAGACCAAAGCTAAGCAAAGTACATTGGCACTATATAATAATTGATGAAGGCCACCGCATAAAGAACGCCTCTTGCAAGTTGAATGCCGACTTGAAACACTACCAGAGCTCTCACAGATTGTTGTTAACTGGAACACCATTGCAGAACAATCTTGAAGAACTATGGGCACTACTTAACTTCTTGTTGCCTAACATATTCAATTCATCAGAGGACTTCTCTCAATGGTTTAATAAGCCATTTGAGAGTACTGGAGATAACTCACCCGATGAAGCTTTACTGTCTGAGGAGGAGAATCTCTTGATCATAAATCGTCTGCACCAAGTTTTGAGGCCATTTGTACTTCGGAGGCTTAAACACAAGGTTGAAAATCAGCTTCCTTCGAAGATTGAGAGACTTATAAGATGTGAGGCTTCTTCGTATCAAAAGCTTTTGATGAAGAGAGTGGAAGATAATCTTGGTGCTATTGGCACTTTAAAGGCTCGGTCAGTACACAACTCTGTCATGGAGCTTCGAAATATTTGCAATCATCCATATCTCAGCCAGCTTCACACAGAGGAGGTAGATAACTATATACCTAAGCATTATCTGCCACCAATCATTAGACTTTGTGGGAAGCTTGAGATGTTGGACCGTTTATTACCTAAACTGAAGGCAACAGATCACCGGGTTCTTTTCTTTTCGACGATGACTAGGCTTCTGGATGTTATGGAAGAATACCTAACTTCTAAACAGTATAGATACCTCCGGTTGGACGGGCATACATCTGGAGGTGATCGTGGTGCTCTAATTGACCTATTTAACAAACCTGATTCCCCATATTTTATCTTCTTACTCAGCATTCGAGCCGGTGGTGTTGGAGTGAATCTTCAAGCTGCCGACACAGTGATTTTATTTGACACTGATTGGAATCCCCAGGTTGATCTGCAAGCCCAGGCAAGAGCTCATAGAATTGGTCAAAAGAGGGATGTTCTTGTTCTCCGCTTTGAAACAGTACAAACTGTTGAAGAACAAGTTAGAGCTTCAGCTGAGCACAAACTTGGCGTTGCTAATCAGAGCATTACTGCTGGATTTTTTGACAATAATACAAGTGCTGAAGATAGAAGGGAATACTTGGAATCCCTTCTGCGTGAGTGTAAGAAAGAAGAAGATGCCCCTGTTTTGGATGATGATGCTTTAAATGATGTCTTAGCCCGAAGTGAAGCAGAGTTAGACGTGTTTGAGTCTGTTGACAGAAACAGGAAAGAGCATGAGCTGGTTACATGGAAGAAATTGGTGCTTGAACATGCAACTGATGGCTCCGATGTTATTCCTCCCCTTCCTTCTCGACTTGTCACTGATGAAGACCTGAAACAGTTCAATGAAGCAATGAAGATATATGATGATGTGCCTAAGGGTGAGGTAGACTCTAATGGAGTAAAACGAAAGAGAGGAGGTCTTGGGGGCCTTGATACTCAACACTACGGCAGGGGAAAACGTGCAAGAGAGGTACGTTCCTATGAAGAGCAATGGACAGAAGAGGAATTTGAGAAGATGTGTCAGGCAGAAACATCAGATTCACTCATAGTAAAAGTGGAAGAGATGAGCCATCAAACCAATGCTTCCAGCTCTGTTGTATCTGCTACTATCACACAACCTGCTGCTACTGTCCCACAACCTGCTGCTACTGTCCCACAGCCTGCTGGTACTGCCCCACAAACTGCTGCTGTTCCTCCACTGGCCCCGATTTTGCCATCTGTTGCGACTTTGCCGGTACAGCATGTTAAAGAGATAGCACCACCAGCAAAACGTGGCCGCGGACGACCAAAAAGAACTGCTTTAGTTAAGTCACCAGCTGCATTAATCTCTCCAGTAACTTCTGGAATTGTTCAAGTAGATATGCAGTTACAGAAGGGAAATAAGTCTGGACATTTAACATCATCTGCTCCTGATTCTGTTGGTCATTCTGCTGAAGTTACAGGTGCGGGTAAACTTATGCAGCAGTCTACCACAGGAGTGACTGCTAACGTACCTCCTGCCACTCCTCTGCCTAATATTCCACCCAATTCTCTGTCGAGTGCAACTCCTCCGCCCACTGATATTGAATCTATGCACCAGTCTAATACAGAAGTGTCTGCTAACGCACCGCCTGCCATTCCTTTGCCTTCTCAGTCAGCTGCTGCTTCTGTTTCTGTACCTATTCAAGCAAAAGGACATGGGCAGAAAACTCAGAGTGGTCGTGAATTGCCTAGACGTAGAGGGAAGAAGCAGGTTATGATGTCGCCTCCTGCGCCTGATGGTTCTGTTGGTCCTGATGTCAAGGTCAACGAGCAATTAAAAGATAAATTAGCGAGTCCTTCTTCAGGCCAGGGTATTCCCCAGAATGAAACTGTTCCTAGTGTTGTGGGTATTCCCCAGAGTGAAACTGTTCCTAGTGTTGCTGTTGTACACCCTCCAACTACCATTTCAGGTTCCGCTTCAAACAGTGGAAACACTAATTTGGGTGCTGGGGTTGTTTTGAATTCACAGTTACCGCTTCCTTTGCCCTCTGTTACTACTCTGGCTCAAACTGCTCCCAGTTATCCATCTGTACAGATGCAAAGTAAAGGGCAAATTGGAAAGTCACAAACTGGAGCTGGAACTTCTCGGCGTAGGGGAAAGAAACAGGCAACAATGTCATCTCCTGTTCCAGTTGTTTTAGGTCTTCTGGGCAGGGATCCAACTTATAATTTACCGACTTCATCTGGCGTTGTATCAGGCGATAAAGCCAGTGAATTAAAAAACCTGCAGGAGAGCAATGTTCAAGAATCAAAATGTATCATCCAAGATCAAGCATCACAGAGTAATCAGGATTTAAAATCATTGGAAGGATCAGATGATTTAGCCAAGCAGGCAGAGATCCTGCCTTCATGTAAAGATAGTACAGTCAATTCTCCAGGGCAAGATTTAGAGAAGGTTAGGAATGCTGATGTTCACAATTCTTCTGTGATGATTAAATCTTCTGAAATTAACCCTTCTAAGGTTGAAGTTTGCACTAATTCAGGGAATGAAAGTTTATCTGTCACATCGTTGCCTATTACTGAGGTTACAAAAGATCAATATACAGATAATAAAGCTCATCAAACAGTTGTAGGTTTAACAACTTCCCCTTTGGTTGTCGACCCTCTAACCAATTCCTCGACCGGTATTGCAACTACAGAACGCCTTATGTCAATCTGTAGATCCTGGTGCTGCAAAGATTGTTCCCAGTACATTAAGCACTGTTCTTCCTTCGGCACCAGGCTCTGA 6537 0.424 MASPQNVEMEAANFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKENSMPFQVISRAMETVINQHGLDIEALKSSRLPLTGGPQIGSSSQAAGGANDSRAGLAENEAPKMEPFAAGRPPIAPTGGAPEYYQGTVAQRSNQSFDQGSPTSLDSRSANSQSQDRQVNQKDGKKAIPKRKRGDSTSPGEMHVDSSSLVEPRNTGVNSRKGKMTKAEPSDGIQAKSGEMTNFNVAPNNTQMENISTFSGNMKTMIRANQEGHLLLAKQTDLTKIGNPMARAPNSKYPEDVEVSSAHIAPGKQQQGAYARVHGGMAVPANVSPMNEPVISSSMQYGGPLDRDGGSSTTLSDGHKISQTGRQNSGSEMTMLRQGVHPRDTGKSPVPAAAASSTMPFKENQLKQLRAQCLVFLAFRNGLPPKKLHLDVAFGTFFSREDGSNKDLNEPKGKSQSFNEPGNTPGVIVPFGSSSNLRQTDKNPSGSSSAGKFIEAESLSKGTESPRMLEDKGNLHSDIQTPSEDRKHLAAKRDVERRNQERMAAQSSSATQYQQKDSSSTRGIVVGNSHLNDGDNGILTAGRANQHSVIGPNNWTGSNPHVSPIQHELPIERRENIPSQFQNVSNNSGSWNHNSINQLTSYSLKEHWKPVPGIDSNSHGVTVMKDGNVLGKNVSAEQGGNERLVSTDFPSSKRFTMSERCIMDRQRKRLLAGQNWVQKQQKAKERMTKCFHKLKENVSSCEDISAKTKSVIELKKLQLLELQRRLRSDFLNDFSKPITNEMEHLKSIKKHRHGRRVKQLEKYEQKMKEERQKRIRERQKEFFSEIEVHKERLDDVFKIKRERWKGFNKYVKEFHKRKERIHRERIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKATEKYLQKLGSKLQEAKTAAGRLGLDVDEAGSTNFLENSETTLVDEDESDQAKHYMESNEKYYKMAHSVKESIAEQPAILHGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPSIHKIVYAGPPEERRRLFKERIIHQKFNVLLTTYEYLMNKHDRPKLSKVHWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESTGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENQLPSKIERLIRCEASSYQKLLMKRVEDNLGAIGTLKARSVHNSVMELRNICNHPYLSQLHTEEVDNYIPKHYLPPIIRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLTSKQYRYLRLDGHTSGGDRGALIDLFNKPDSPYFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEDAPVLDDDALNDVLARSEAELDVFESVDRNRKEHELVTWKKLVLEHATDGSDVIPPLPSRLVTDEDLKQFNEAMKIYDDVPKGEVDSNGVKRKRGGLGGLDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAETSDSLIVKVEEMSHQTNASSSVVSATITQPAATVPQPAATVPQPAGTAPQTAAVPPLAPILPSVATLPVQHVKEIAPPAKRGRGRPKRTALVKSPAALISPVTSGIVQVDMQLQKGNKSGHLTSSAPDSVGHSAEVTGAGKLMQQSTTGVTANVPPATPLPNIPPNSLSSATPPPTDIESMHQSNTEVSANAPPAIPLPSQSAAASVSVPIQAKGHGQKTQSGRELPRRRGKKQVMMSPPAPDGSVGPDVKVNEQLKDKLASPSSGQGIPQNETVPSVVGIPQSETVPSVAVVHPPTTISGSASNSGNTNLGAGVVLNSQLPLPLPSVTTLAQTAPSYPSVQMQSKGQIGKSQTGAGTSRRRGKKQATMSSPVPVVLGLLGRDPTYNLPTSSGVVSGDKASELKNLQESNVQESKCIIQDQASQSNQDLKSLEGSDDLAKQAEILPSCKDSTVNSPGQDLEKVRNADVHNSSVMIKSSEINPSKVEVCTNSGNESLSVTSLPITEVTKDQYTDNKAHQTVVGLTTSPLVVDPLTNSSTGIATTERLMSICRSWCCKDCSQYIKHCSSFGTRL* 2179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0682 2178 Gene3D - 967 1216 IPR038718 -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 185 206 - -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 433 552 - -
Psa4g0682 2178 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1299 1445 IPR001650 -
Psa4g0682 2178 Pfam Snf2-ATP coupling, chromatin remodelling complex 1514 1600 IPR029295 GO:0042393
Psa4g0682 2178 MobiDBLite consensus disorder prediction 439 483 - -
Psa4g0682 2178 Gene3D - 1217 1439 IPR027417 -
Psa4g0682 2178 PANTHER SNF2/RAD54 HELICASE FAMILY 95 2011 - -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 1805 1854 - -
Psa4g0682 2178 Pfam SNF2-related domain 980 1270 IPR000330 GO:0005524|GO:0140658
Psa4g0682 2178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 948 1207 IPR027417 -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 1944 1972 - -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 164 184 - -
Psa4g0682 2178 PANTHER CHROMATIN STRUCTURE-REMODELING COMPLEX PROTEIN SYD 95 2011 - -
Psa4g0682 2178 CDD DEXHc_SMARCA2_SMARCA4 973 1209 - -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 1944 1978 - -
Psa4g0682 2178 ProSiteProfiles HSA domain profile. 794 868 IPR014012 -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 137 163 - -
Psa4g0682 2178 CDD SF2_C_SNF 1287 1419 - -
Psa4g0682 2178 SMART helicmild6 1325 1409 IPR001650 -
Psa4g0682 2178 Coils Coil 789 809 - -
Psa4g0682 2178 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 988 1155 IPR014001 -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 2050 2070 - -
Psa4g0682 2178 SMART SnAC_2 1500 1600 IPR029295 GO:0042393
Psa4g0682 2178 Coils Coil 1452 1472 - -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 137 216 - -
Psa4g0682 2178 Pfam Helicase conserved C-terminal domain 1296 1409 IPR001650 -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 369 388 - -
Psa4g0682 2178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1209 1501 IPR027417 -
Psa4g0682 2178 SMART ultradead3 972 1166 IPR014001 -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 531 552 - -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 1807 1825 - -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 493 530 - -
Psa4g0682 2178 MobiDBLite consensus disorder prediction 336 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0682 Psa-Chr4 43490565 43510101 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0682 1296 1466 RAD5 or RAD16-like Gene Family AT5G22750 33.333 7.87e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa4g0682 SNF2_N 1.5e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0682 - - mtr:MTR_4g118720 3437.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0682 4 43490565 43510101 Psa4g0682 4 43490565 43510101 ECH