Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0677 ATGGGTAGAGCTTCCAAATCTCAGCCTTCAAGCGCCTCCAATTCAGAGGAAGAAGAAGAGGTTGAGAACGTTAACGACCAGATCGACGATGACGAAGACGAACTCGAAGCCGTTGCTCGTTCCGCTAGCTCCGACGATGATGACAATGTGCCAGATGAAGATGAAGCCGCCGAGTACGCCGAAGACGACGATAATCAGGATGAAAGTAATGTTAATCCTGAGATTAGTAAGCGTGAGAAAGCTAGATTGAAGGAATTGGAGAGGTTGAAGAAGCACAAGATTCAGGAGATATTGGATGCGCAAAATGCAACCATTGATGCTTCTATGAACACTAAAGGAAAAGGGCGATTGAAGTATCTCTTACAGCAAACTGAGCTGTTTGCTCATTTTGCAAAAACTGAGGAAGCTTCATCTCAAAAGAAGACTAAGGGAAGGGGACGCCATGCATCTAAAATGACTGAGGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGGTCGTTTAGGAAATACACGGCTGGTTACTCAACCATCATGCATCCAAGGGAAAATGAGGGATTACCAACTTGCTGGGCTGAATTGGCTCATACGTTTGTATGAGAATGGGATAAATGGAATTTTAGCAGATGAAATGGGGCTTGGTAAAACTTTACAAACTATATCTTTGCTGGGCTATTTACATGAGTTCAGAGGAATAACGGGTCCACATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTTTGTCCTGTTTTACGGGCAGTAAAGTTCCTTGGTGGCCCTGATGAAAGGAAACATATAAGAGAGGACCTATTGGTTGCTGGAAAGTTTGATGTAGTTGTGACAAGTTTCGAAATGGTAATCAAGGAGAAGACTACATTGCGTCGGTTTAGTTGGCGTTATGTTATTATTGATGAAGCCCACCGGATCAAGAATGAGAATTCCCTCCTTTCCAAAACAATGAGGTTATATAATACAAATTACCGACTCCTTATAACTGGCACACCGCTACAGAACAATCTTCATGAACTATGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAACTACACAAGGTCCTCCGTCCATTTCTTCTTCGGAGGTTGAAGTCAGATGTCGAGAAAGGCTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCCCAGATGCAGAAACAATATTATAAGGCATTACTGCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGAGAACGGAAACGACTTCTAAATATAGCAATGCAACTTCGTAAATGTTGCAATCACCCATATCTTTTCCAAGGTGCTGAACCTGGACCTCCCTACATAACAGGGGATCATCTTGTTACAAGTGCTGGCAAAATGGTTCTAATGGATAAATTACTTCCCAAACTAAAAGAGCGGGATTCTAGGGTCCTAATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTGATGTATCGTGGATACCAATATTGTCGCATAGATGGAAATACTGGTGGAGATGATCGTGATGCTTCCATTGAGGCTTTTAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGAGCTGGAGGTCTTGGTATCAATCTTGCTACTGCTGATGTTGTCATTCTTTATGATAGTGACTGGAACCCACAAGCTGATTTACAAGCTCAAGATCGAGCTCATAGGATTGGTCAGAAGAAAGAAGTTCAAGTTTTCAGATTCTGCACTGAGTATACAATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGGTTAGCTGAACAAAAGACTGTTAATAAAGATGATTTGCTTCAAATGGTTAGATTCGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCCAAAGGAGAGGAGTCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCAATCAAATTCAAGATGGACGACACTGCTGATTTGCTTGATTTTGATGATGAGAAAGATGAAAACAAAGTTGATTTCAAAAAACTTGTGAGTGATAACTGGGTTGAGCCATCAAGAAGAGAACGGAAGCGAAATTACTCAGAGTCTGAATACTTCAAACAAACAATGCGCCAAAGTGCTCCTACTAAACCAAAAGAACCCCGAATTCCTAGGATGCCACAATTGCACGATTTTCAGTTTTTCAACACACACAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGTTACTTAATGCAAGCACATCAGAAGAATCAGGTCAAAGACTCCATAGATGTTGATGAACCGGAAGAGGGGGGAGAGCCATTGACTGCAGAAGAGTCTGAAGAAAAGGAGCAGCTGCTAGAGCAGGGATTTTCATCATGGAGCCGAAAAGATTTTAACACTTTCATCAGGGCATGTGAAAAATATGGCCGAAATGATATTACAAGTATTGCTTCTGAGATGGAAGGAAAGACAGAAGAAGAAGTCGAAAGATATGCAGAAGTTTTCAAAGAGCGATACAAGGAATTGAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGTCAAGAATAGCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGATACAATATGGACAAAACAAAGGGAAATTATACAATGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGGAATTGGGATGAATTGAAGGGGGCATTTCGGATGTCACCCTTGTTTCGTTTTGATTGGTTTGTAAAGTCGCGCACAACTCAGGAACTAACAAGGAGATGCGACACCCTCATTCGGCTGGTGGAAAAAGAAAATCAAGAATATGATGAAAGGGAGAGACAAGCTCGTAAAGAAAAGAAACTTGCCTCCAAGAGTTCAACTCCATCAAAGCGCGTATTGCCAAGACAGGCAGAGAGTCCATCTCTGAAGAAGCGGAAGCAATTAACTATGGATTACTATGTTAGCTCGGGGAAGAAAAAGAAATAA 3183 0.4084 MGRASKSQPSSASNSEEEEEVENVNDQIDDDEDELEAVARSASSDDDDNVPDEDEAAEYAEDDDNQDESNVNPEISKREKARLKELERLKKHKIQEILDAQNATIDASMNTKGKGRLKYLLQQTELFAHFAKTEEASSQKKTKGRGRHASKMTEEEEDEEYLKEEEGRLGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGGPDERKHIREDLLVAGKFDVVVTSFEMVIKEKTTLRRFSWRYVIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYITGDHLVTSAGKMVLMDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEESTAELDAKMKKFTEDAIKFKMDDTADLLDFDDEKDENKVDFKKLVSDNWVEPSRRERKRNYSESEYFKQTMRQSAPTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEGGEPLTAEESEEKEQLLEQGFSSWSRKDFNTFIRACEKYGRNDITSIASEMEGKTEEEVERYAEVFKERYKELNDYDRIIKNIERGESRIARKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKGAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLASKSSTPSKRVLPRQAESPSLKKRKQLTMDYYVSSGKKKK* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0677 1060 MobiDBLite consensus disorder prediction 134 156 - -
Psa4g0677 1060 MobiDBLite consensus disorder prediction 1007 1024 - -
Psa4g0677 1060 SUPERFAMILY Homeodomain-like 839 889 IPR009057 -
Psa4g0677 1060 SUPERFAMILY Homeodomain-like 891 1013 IPR009057 -
Psa4g0677 1060 Coils Coil 76 103 - -
Psa4g0677 1060 MobiDBLite consensus disorder prediction 803 833 - -
Psa4g0677 1060 Gene3D iswi atpase 891 923 - -
Psa4g0677 1060 Gene3D ISWI, HAND domain 737 835 IPR036306 GO:0003677|GO:0006338|GO:0031491
Psa4g0677 1060 Pfam Helicase conserved C-terminal domain 490 600 IPR001650 -
Psa4g0677 1060 MobiDBLite consensus disorder prediction 15 36 - -
Psa4g0677 1060 Pfam SNF2-related domain 198 465 IPR000330 GO:0005524|GO:0140658
Psa4g0677 1060 Gene3D - 924 1028 - -
Psa4g0677 1060 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 10 1060 - -
Psa4g0677 1060 Gene3D - 836 890 - -
Psa4g0677 1060 MobiDBLite consensus disorder prediction 134 165 - -
Psa4g0677 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 400 IPR027417 -
Psa4g0677 1060 SMART sant 836 885 IPR001005 -
Psa4g0677 1060 SMART helicmild6 516 600 IPR001650 -
Psa4g0677 1060 MobiDBLite consensus disorder prediction 744 769 - -
Psa4g0677 1060 Pfam SLIDE 893 1003 IPR015195 GO:0003677|GO:0005634|GO:0006338
Psa4g0677 1060 MobiDBLite consensus disorder prediction 1 79 - -
Psa4g0677 1060 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 748 838 IPR036306 GO:0003677|GO:0006338|GO:0031491
Psa4g0677 1060 CDD DEXHc_SMARCA1_SMARCA5 182 402 IPR044754 GO:0005524
Psa4g0677 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 682 IPR027417 -
Psa4g0677 1060 MobiDBLite consensus disorder prediction 1007 1041 - -
Psa4g0677 1060 CDD SF2_C_SNF 486 611 - -
Psa4g0677 1060 SMART ultradead3 181 373 IPR014001 -
Psa4g0677 1060 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 490 641 IPR001650 -
Psa4g0677 1060 Gene3D - 406 698 IPR027417 -
Psa4g0677 1060 Coils Coil 986 1020 - -
Psa4g0677 1060 Coils Coil 14 41 - -
Psa4g0677 1060 ProSiteProfiles SANT domain profile. 835 887 IPR017884 -
Psa4g0677 1060 Pfam HAND 749 831 IPR015194 GO:0003677|GO:0006338|GO:0031491
Psa4g0677 1060 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 362 IPR014001 -
Psa4g0677 1060 CDD SANT 839 883 IPR001005 -
Psa4g0677 1060 Gene3D - 186 401 IPR038718 -
Psa4g0677 1060 PANTHER SNF2/RAD54 HELICASE FAMILY 10 1060 - -
Psa4g0677 1060 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0677 Psa-Chr4 42783193 42792520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0677 206 627 RAD5 or RAD16-like Gene Family AT1G02670 27.579 2.70e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa4g0677 SNF2_N 1.8e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0677 K11654 - gmx:100791510 1853.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0677 4 42783193 42792520 Psa4g0677 4 42783193 42792520 ECH
Psa4g0677 4 42783193 42792520 Psa1g4287 1 339134795 339143687 PCT