Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0661 ATGGTGGACAACAACATTGGAGGAAGTTCTTTTGATAACGAAAATGGTGGCATTAAGGAGCAAGATCGGTTGTTACCAATAGCAAATGTTGGGAGGATAATGAAGCAGATATTACCACAGAATGCAAAGATCTCAAAGGAATCAAAAGAAACAATGCAAGAGTGTGTTTCAGAGTTCATAAGCTTTGTGACAAGTGAGGCATCAGAGAAATGCAGGAAGGAAAGAAGAAAGACAGTGAATGGTGATGATATCTGTTGGGCTTTAGCTACACTTGGGTTTGATGATTATGCTGAACCAATGAGAAGGTATTTGCATAGATATAGAGAATTAGAGGTTGATAGAACACCAACCTCTAATAATATTGTTCAAGATAGAGGAAATTAA 384 0.3724 MVDNNIGGSSFDNENGGIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVDRTPTSNNIVQDRGN* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0661 127 SUPERFAMILY Histone-fold 21 120 IPR009072 GO:0046982
Psa4g0661 127 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Psa4g0661 127 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Psa4g0661 127 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Psa4g0661 127 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Psa4g0661 127 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 2 120 - -
Psa4g0661 127 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 120 IPR027113 GO:0001228|GO:0006355|GO:0016602
Psa4g0661 127 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Psa4g0661 127 Gene3D Histone, subunit A 12 126 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0661 Psa-Chr4 42122679 42123500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0661 18 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 79.381 5.98e-57 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa4g0661 CBFD_NFYB_HMF 3.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0661 K08065 - gmx:100786046 204.912