Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0660 ATGTCAACCTCTAAAAAACCAACATCAGATTCATCTTTCAAAGCATATCATGAAACAAATCAAACACAAATGTGTCTGTCACTACTTCAAAGGAACACCAACACATTACCTAGTGGTGAAAAAAGAGGTAGAAGAAAACAAACCGAACCAGGAAGGTTTCTTGGTGTTAGAAGAAGACCTTGGGGTAGATATGCTGCTGAAATCAGAGACCCTACAACCAAAGAAAGACACTGGCTTGGTACTTTTGATACTGCTCAAGAAGCTGCTCTTGCTTATGATAGAGCTGCCATTTCCATGAAAGGAAATCAAGCTAGAACAAATTTCATTTACACTGATACTATAAACTTTCACACCCTTGTTTCTTCTCCTATTGATGTTCAAACTCTCTTACCAGCTTCACAGTTACTCACAAACACTACTCAAACCAATCAAAATGCTACTTTTTCTCACCTCAACAACACTTCACTCACTACTGAAAAAGATCAAAACATGATCATCATGAGTACTTTTGATCATGAAAAAACAACACATGGATCATCATCAAATCATGATGATAGTTTCTTCTTCTCCAATGAAACTACTAATAGTACTAATAACAACTCTGGCTATCTTGAATGCATAGTGCCTGATAACTGTTTCAGAAACAGCACTGTTAGTTCTGCTTCAAGTGATGAAAAAGTTGGTGATAGCAACAAAGTTTCCATGGAGGGTCAAATTCAATCACACTTTGGCATCCCTTCATTTTCTCAAGAAATGCCAACAAGGGTCACTAGTTTTTCAGAGTTTTCTTATTCTCCAAGTGAAGGTTTCTTAGATTGGAATTCTAATGAACTTTCAGCTATATTCAACAACAATCCATTAACAGTTCATGAAGATGAATGCATGGAAACATTAATGTTTCCAAATTATCCCATCATTGAAAACCTCACTCCAAGCTATGGAATCCTCAATGACCAAGCTTCTTCTTCAACAAACTATTCTCCATCACTTGATTTTGGTTACCCTCTCTTTTAA 1014 0.3629 MSTSKKPTSDSSFKAYHETNQTQMCLSLLQRNTNTLPSGEKRGRRKQTEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAAISMKGNQARTNFIYTDTINFHTLVSSPIDVQTLLPASQLLTNTTQTNQNATFSHLNNTSLTTEKDQNMIIMSTFDHEKTTHGSSSNHDDSFFFSNETTNSTNNNSGYLECIVPDNCFRNSTVSSASSDEKVGDSNKVSMEGQIQSHFGIPSFSQEMPTRVTSFSEFSYSPSEGFLDWNSNELSAIFNNNPLTVHEDECMETLMFPNYPIIENLTPSYGILNDQASSSTNYSPSLDFGYPLF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0660 337 MobiDBLite consensus disorder prediction 38 53 - -
Psa4g0660 337 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Psa4g0660 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF086 1 330 - -
Psa4g0660 337 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Psa4g0660 337 MobiDBLite consensus disorder prediction 34 53 - -
Psa4g0660 337 Pfam AP2 domain 55 101 IPR001471 GO:0003700|GO:0006355
Psa4g0660 337 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Psa4g0660 337 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Psa4g0660 337 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Psa4g0660 337 SUPERFAMILY DNA-binding domain 53 109 IPR016177 GO:0003677
Psa4g0660 337 CDD AP2 52 108 IPR001471 GO:0003700|GO:0006355
Psa4g0660 337 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0660 Psa-Chr4 42081157 42082767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0660 1 214 AP2-EREBP Transcription Factor Family AT5G18560 46.988 1.35e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa4g0660 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0660 - - cam:101500468 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0660 4 42081157 42082767 Psa1g4337 1 341684073 341685659 PCT