Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0656 ATGGAACGGTACGGCCGAGTAAACGAAGGGTCGCAGTCTGATCCGACGCCGGAATGGACTGTCGCCGGTGGAGAGGCCACGCAGGAAGGGTATGGATTGGTTGGTGGTGAATCGTATCCTCAGCGACCTGATGAAGCTGATTGTATCTATTATTTGAGGACAGGTTTTTGCGGTTACGGTTCCAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCAGGGGAGTATCCGGAACGACTTGGACAGCCTGTGTGCCAGTATTTCCTAAGGACAGGATCATGCAAATTTGGTGCTTCATGCAAGTATCACCATCCTAGACAATCAGCAGGAGCTACTGTCCCCGTGACGCTAAATTATTATGGATATCCTTTGCGAGTGGGTGAGAAAGAGTGTTCCTACTATGTGAAAACAGGTCAATGCAAGTTTGGCGCAACTTGTAAATACCATCATCCACAGCCCACCGGTGTCCAAATGCTAGCACCGTCACCAGCTCCCCAAGTTTCACCTCTGCCTATGCCAGTACCTTCACCGATTTATCAAACTGTGCAGGCTCCATCCGGTCCTTCACAGCAACAATATGGTGTACTGGTCGCGAGGCCACCTCTGCTGCATGGCTCGTTTGTCCAGGGTCCCTACGGGCCAATGGTCGTGTCCCCCACTATGGTACCTTTTCAAGGCTGGAGCCCTTATCAACAGGCTCCAGCAGCAAGTCCTGTACTTCCTACGAGTACTCCGTTGAGCATTGCTACACCTCAGATTTACGGGATAACTCAGCTCCCTTCACCGACAACTGCCTTTACTGGACATTTTCAACCTTCTGGTTCCTCAACTGGTCCTTCAGGCAGTAGTCAGAAGGAACCCTCATTACCCGAAAGGCCTGATCAGCAGGATTGTCATCATTACATGAAAACGGGGGAGTGTAAATTTGGTTCTTCGTGTAGATATCATCATCCGCGAGACACTGGTGCACCGAAAGTGATCTTTAGTCCTGCCGGTCTTCCTTTGCGCCCGGGGGCACAACCATGCACTCATTATACGCAGCGTGGAATTTGTAAGTTTGGATCTGCATGCAGATTTGATCATCCTATGGGATCCCTGAGTTACAGTCCATCTGCTTCTTCTCTAGCTGATATGCCAGTTGCACCCTATCCGGTTGGTTCCTCCATTGGCACCCTTGCTCCATCATCCTCATCATCCGAGTTTAGGCCTGAACTTGCCTCGGGATCCAGCAAAGAGTCTGCTTCATCCAGAATGTCATCATCCATGAGCACGTCGACTGCATCAGCTGGGTTAACTCTGTCAACTGTCGTACCGGTTTCTCAATCAAGTAGCCAGCCATCTGCTCCGAGTTCCAGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1437 0.5087 MERYGRVNEGSQSDPTPEWTVAGGEATQEGYGLVGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERLGQPVCQYFLRTGSCKFGASCKYHHPRQSAGATVPVTLNYYGYPLRVGEKECSYYVKTGQCKFGATCKYHHPQPTGVQMLAPSPAPQVSPLPMPVPSPIYQTVQAPSGPSQQQYGVLVARPPLLHGSFVQGPYGPMVVSPTMVPFQGWSPYQQAPAASPVLPTSTPLSIATPQIYGITQLPSPTTAFTGHFQPSGSSTGPSGSSQKEPSLPERPDQQDCHHYMKTGECKFGSSCRYHHPRDTGAPKVIFSPAGLPLRPGAQPCTHYTQRGICKFGSACRFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSEFRPELASGSSKESASSRMSSSMSTSTASAGLTLSTVVPVSQSSSQPSAPSSSSLATPSATTSSTVSHTSS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0656 478 Gene3D - 119 170 - -
Psa4g0656 478 ProSiteProfiles Zinc finger C3H1-type profile. 87 115 IPR000571 GO:0046872
Psa4g0656 478 MobiDBLite consensus disorder prediction 401 478 - -
Psa4g0656 478 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 468 - -
Psa4g0656 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 69 IPR000571 GO:0046872
Psa4g0656 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 160 IPR000571 GO:0046872
Psa4g0656 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872
Psa4g0656 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 327 IPR000571 GO:0046872
Psa4g0656 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 348 371 IPR000571 GO:0046872
Psa4g0656 478 Gene3D - 298 382 - -
Psa4g0656 478 Gene3D - 40 118 - -
Psa4g0656 478 SUPERFAMILY CCCH zinc finger 90 115 IPR036855 GO:0046872
Psa4g0656 478 SUPERFAMILY CCCH zinc finger 347 374 IPR036855 GO:0046872
Psa4g0656 478 SMART c3hfinal6 87 114 IPR000571 GO:0046872
Psa4g0656 478 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Psa4g0656 478 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Psa4g0656 478 SMART c3hfinal6 42 69 IPR000571 GO:0046872
Psa4g0656 478 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Psa4g0656 478 MobiDBLite consensus disorder prediction 1 24 - -
Psa4g0656 478 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
Psa4g0656 478 SUPERFAMILY CCCH zinc finger 302 328 IPR036855 GO:0046872
Psa4g0656 478 SUPERFAMILY CCCH zinc finger 44 70 IPR036855 GO:0046872
Psa4g0656 478 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Psa4g0656 478 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Psa4g0656 478 PANTHER PROTEIN PHOSPHATASE RELATED 1 468 - -
Psa4g0656 478 SUPERFAMILY CCCH zinc finger 134 161 IPR036855 GO:0046872
Psa4g0656 478 MobiDBLite consensus disorder prediction 279 302 - -
Psa4g0656 478 ProSiteProfiles Zinc finger C3H1-type profile. 42 70 IPR000571 GO:0046872
Psa4g0656 478 MobiDBLite consensus disorder prediction 279 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0656 Psa-Chr4 41838430 41842315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0656 1 440 C2H2 Transcription Factor Family AT5G18550 54.902 2.48e-145 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g0656 zf-CCCH 3.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0656 - - mtr:MTR_4g119280 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0656 4 41838430 41842315 Psa4g0656 4 41838430 41842315 ECH
Psa4g0656 4 41838430 41842315 Psa1g4338 1 341685819 341692877 PCT