Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0645 ATGGGCCCTACAAGGAAATCTAGAAGTGTAAATAAGAGGTTCTCTAATATTCGTGAGGCTGCATCTAGTAAAGATAAAGGTGCACCAAATACTGGCAAGAACAGACAGAAGGCTAGTCCTGGTATTCAAAAGAAGAGAAAATTGGCGGACATGTTAGGACCACAATGGAGTAAGGAGGAACTTGAATGTTTCTATGAAGCTTACCGTGAACATGGGAAAGATTGGAAGAAGGTTGCTCTTGCAGTACGTAATAGGACCATGGAAATGGTAGAAGCCCTGTACACTATGAACAGGGCATACTTATCTCTACCAGAGGGCACTGCTTCTGTTGTTGGACTGATAGCAATGATGACTGATCATTATAGTATACTGGGAGGAAGTGACAGTGGAAAAGACAGCAACGGAGATGCAGAAATATCTAAAAAGTCTAAAAAACGTCCACGGGGAAAGCAAAGTGACAATAAAGCAGTAGATGAACACTTTTCAGGTCATTCTCAGCCACATTCTGTTGCATCAGATGATGGTTGCCTGTCATTGTTGAAGAAGAGGCATTCTGGAATTAGACCTCATGCTGTTCGAAAAAGGACTCCCCGTGTCCCTATTTCATATTCTATTGGCAAAGATAATGGAGGAAAGTTTTTTTCATCTGCTAGGCAGGACTCCAAACAAATGGCTGATACTAATGATGTCACTCATAAAATTGCATTAGCATTGGCAGAGGCTTCACAACGAGGTGGTTCATCAAAAAATATTGGATCGTCAAACAAGAAAAACATGCCATCACCCAATTTGAAAATTGGGAAGAAGCACGTTAAATTAGAAATAGTTGGAGCCAAGTTTGGCAACTCTAACATGGATGGGAGTAGTTCTGAGTTGAGTTTAGGAAGCACAGAAGGTGATAATGGAGAATATTCTAGAAAATTAATTTATCGGAGAAGCAGAGAAAATACTGGAAGAGAAAGGAATCAGGAAAAGGGAATAAAACACTACAGAAAGAATTTAAAACCCGAGGAGAATATGAACAAGCATTTGAATGACCTGAAGGAGGCCTCCAGTGGGACCGATGGTGGTAAACACCAGAGTTCCTTCAAGTCCAATTTTGACATAGATTTTCCAAATGCAAAAAGTGCAAGGTCTTCTTACAAGGGTCCCAGAAAGAAAAGTAAAAAACTACTTTTTGAGAAAGACGAAAGTTCGGCTTTCGATGCTCTGAAAACTTTGGCTGATCTATCTTTGATGATGCCTACAACAAACCCAGACACTGAATCATCTGTGCAGTTTAATGAAGGAAAGTATAATATGGTTGATGAGTCTAAAATGGAAACAGATAATGGAAACAGTTTCAGAAAATCCGGCAAGGTGTTTTCTGATAAAGGAGCTGCTGCTCCCAAAGCAGAGGGAGCATACCAGCTTAATGCAGGAAGCAGGAAAAGAAAACAAAAATCAACTACCTTAAAAATTGATGAAACACATACTGGTTCTCATATAAGCGATTCCCAGAAAATCAAGGTTACTGATGAGGTGAAGAAGTCCTTGGTTAAAGGCAAGCGATCATCTGTCAGTACAGCTCATTCCAGACAATTGAAAATGGTGACATCCCTAGGAAATATGTCTTCAAATATTATTGACAAAGCAGAAAGGGATGGCTCATCTTTTTCCCCTATAAAGGTATTGTCTACTAGCCAAGTCGGTCAAGTAAGCAGAGACCGACCTAGAAGAAAGATGGAAAAACCAAGACCAATGGTACAAAAAGATCATAGAGTGTCTGAAAAATCCATTGCTTCTTACTGGTCGAATAGTATTGAACGTCACAAGGGAAAGCTTAATAATTGTCTGTCTTCATATCAAATGCGGCGATGGTGCACCTCTGAATGGTTTTATAGTGCTATTGATTACCCATGGTTTTCAAAGAGAGAGTTTGTAGAGTACTTAGACCATGTTGGACTGGGTCATGTTCCCAGATTGACTCGTATTGAGTGGGGAGTCATTAGAAGTTCTCTTGGTAGACCACGAAGATTTTCAGAGCAATTTTTGATAGAAGAAAAACATAAACTTAATCAGTACCGGGAATCTGTCAGATCACATTATGCTGAAGTTCTTGCTGGTACCAAGGAAGGCCTACCTGCTGATTTGGCCCAGCCATTAATTGTTGGGCAGCGAGTTATTGCTATTCATCCAAAGACAAGGGAAATTCATGATGGCAGTATACTGACTGTTGACCATTGTAGATACCGGGTTCAGTTTGACCAGCATGAACTTGGAGTTGAGTTTGTCATGGATATCGACTGCATGCCTTTGTATCCATCTGAAAATATGCCCATGTCTCTGATAAGACACCATATCTCTCCTGCTAGAATAAATGGGAACCTTAGTGAGCTTACGCATAATGGAAAAATAAGTCACAGAAAGATCTCCGAGCATACAATATTGTCCCCAAGTGAGAACTCAGATGCCATAAAAGGTCGCTGTGTACCACCCGCATTACATGGGTTTTCTTCAAGCTGCAAATCACAAGCAAATGTTGCGGGCAGTGAAATTTGTAATGGCCAATCAGTATCAACTTCTCAATCTTCCTTTCTTGAACGAGTCCATTCAAAAGAAGCTGATATATTAGCTATTTCAGAATTGACCCGTGCTCTAGAAAAGAAGGAACTTGTGTTGTCTGAACTGAAGCACATGAATGACGGGGTATCAGAAAGCCAGAAATGCGGAGACAACTCGGTGAAAGATTCAGAACCTTTTAAAAGGAATTATGCTTCAGTGCTAAAGCAATTAACTGAAGCAAATGAACAGGTTTCTTCTGGCTTGTTTTGCTTGAGGCAACGCAATGCATATCAAGCAAGTTCCTCAGTTTTGTCATTGAAGCCCATGGCAAATGTCGATGATCCTGGTGGTCAGGCTAGCTCTTCCAATTGTTCAGCTTGCCACAACCAAGAATCAAGATCTCAAAATCATATAGCGGAAATTGTTGAAAGTTCTAGAAGAAAAGCCCGGACCATGGTTGTTCAAGCTACTCAGGCAATGTCAGTTTTTACGAAGACAGAAAGTAAGGTTGAAAGAATTGAGGATGCAATAAATTTTATTAATAACCGGATTTCAGTTGATGACCCTACCGCATCAGTCACTAGTTCTCTGCCCGTAGATTCTATTACTTTGGCTTCTCGGGATCAATTGAATGCAAGCAGCACATTAAACATTTTAGCAAGGTGTCATGTACAAGATGATGAACTTAACAGTACATCTGACCAAAATGAAATGAAAATTCCCTCAGAACTCATATCTCATTGTCTAGCAACACTGCTCATGATTCAGAAGTGTACGGAACGACAATTTCCCCCAGCTGATGTTGCACAGGTATTAGATTCTGCAGTCTCCAGTTTACAGCCATTTTGTTCAAAGAATCTTCCAATATATGGTGAGATACAGAAATGTATGGGCATCATAAGAAATCAGATATTGGCACTCGTACCTACCTAG 3477 0.4024 MGPTRKSRSVNKRFSNIREAASSKDKGAPNTGKNRQKASPGIQKKRKLADMLGPQWSKEELECFYEAYREHGKDWKKVALAVRNRTMEMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYSILGGSDSGKDSNGDAEISKKSKKRPRGKQSDNKAVDEHFSGHSQPHSVASDDGCLSLLKKRHSGIRPHAVRKRTPRVPISYSIGKDNGGKFFSSARQDSKQMADTNDVTHKIALALAEASQRGGSSKNIGSSNKKNMPSPNLKIGKKHVKLEIVGAKFGNSNMDGSSSELSLGSTEGDNGEYSRKLIYRRSRENTGRERNQEKGIKHYRKNLKPEENMNKHLNDLKEASSGTDGGKHQSSFKSNFDIDFPNAKSARSSYKGPRKKSKKLLFEKDESSAFDALKTLADLSLMMPTTNPDTESSVQFNEGKYNMVDESKMETDNGNSFRKSGKVFSDKGAAAPKAEGAYQLNAGSRKRKQKSTTLKIDETHTGSHISDSQKIKVTDEVKKSLVKGKRSSVSTAHSRQLKMVTSLGNMSSNIIDKAERDGSSFSPIKVLSTSQVGQVSRDRPRRKMEKPRPMVQKDHRVSEKSIASYWSNSIERHKGKLNNCLSSYQMRRWCTSEWFYSAIDYPWFSKREFVEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKHKLNQYRESVRSHYAEVLAGTKEGLPADLAQPLIVGQRVIAIHPKTREIHDGSILTVDHCRYRVQFDQHELGVEFVMDIDCMPLYPSENMPMSLIRHHISPARINGNLSELTHNGKISHRKISEHTILSPSENSDAIKGRCVPPALHGFSSSCKSQANVAGSEICNGQSVSTSQSSFLERVHSKEADILAISELTRALEKKELVLSELKHMNDGVSESQKCGDNSVKDSEPFKRNYASVLKQLTEANEQVSSGLFCLRQRNAYQASSSVLSLKPMANVDDPGGQASSSNCSACHNQESRSQNHIAEIVESSRRKARTMVVQATQAMSVFTKTESKVERIEDAINFINNRISVDDPTASVTSSLPVDSITLASRDQLNASSTLNILARCHVQDDELNSTSDQNEMKIPSELISHCLATLLMIQKCTERQFPPADVAQVLDSAVSSLQPFCSKNLPIYGEIQKCMGIIRNQILALVPT* 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0645 1158 MobiDBLite consensus disorder prediction 562 585 - -
Psa4g0645 1158 SUPERFAMILY Homeodomain-like 52 99 IPR009057 -
Psa4g0645 1158 MobiDBLite consensus disorder prediction 1 47 - -
Psa4g0645 1158 MobiDBLite consensus disorder prediction 127 172 - -
Psa4g0645 1158 MobiDBLite consensus disorder prediction 567 585 - -
Psa4g0645 1158 MobiDBLite consensus disorder prediction 312 339 - -
Psa4g0645 1158 Pfam Myb-like DNA-binding domain 55 90 IPR001005 -
Psa4g0645 1158 Pfam DIRP 625 726 IPR033471 -
Psa4g0645 1158 CDD SANT 56 90 IPR001005 -
Psa4g0645 1158 Gene3D - 4 108 - -
Psa4g0645 1158 MobiDBLite consensus disorder prediction 240 264 - -
Psa4g0645 1158 SMART DIRP_2 626 727 IPR033471 -
Psa4g0645 1158 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1158 IPR028306 -
Psa4g0645 1158 SMART sant 52 100 IPR001005 -
Psa4g0645 1158 PANTHER LIN-9 1 1158 IPR010561 GO:0006351|GO:0017053
Psa4g0645 1158 MobiDBLite consensus disorder prediction 1 17 - -
Psa4g0645 1158 MobiDBLite consensus disorder prediction 243 261 - -
Psa4g0645 1158 Coils Coil 873 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0645 Psa-Chr4 40676463 40702213 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa4g0645 DIRP 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0645 - - gmx:100781646 1709.89