Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0607 ATGGCAAACTTGGGAAAATCAACATGCGGTGAAATTAAAAAAACTCATTCTTCCTCCCTCAAGAGAAATCCGAGCGAGATCTTCACCAAGGTGCAAGAACTTGCCGCCTCCTCTCAAAATTCTATGGCTATGAATGGACACAAAACAAAGTTAAACAGAAATCGAAGGCCAACACTAACCGATTGCAACGGGGTCGACGACGATGTGAAGAGTGATTTTGGATTCCCCTTCAGAACGTTAGCTATTCCGGCAACTCAACTTCGACTTTCCTCTTCCGATTGTGAAAGGCCTCAGAAATTCTCTCTGTGGTCCCTCTCCTATGTCTTTTTCCGTACCGTTGGTGGTGACATTACCTTTGAGAGTGCAGAGTTTTTCGGTGTCGAATCTCACAACCGCTTAGGTGAGGTCAAAGGTGGATTTCGAGCTCGCTCATGCTTTCTTGAAATGCGAAAGGGATTGATGAGTCTTTCTCCCTTGGCTTCAGTATTTCCCACACGCTCACTACCTGCTAAGTCTACTAGCCAAAGGATGTGCAGTGGTCCTGACAAATCAAAATCTCGTTCAACTTGTTCATCTTCGTCTGCGGAAGAAGGTTCAAATAACATCAAAGACATGAAAAACCTAACAGTTCATACCGATGATTCTTTTTCCAGCTTGCTTGAACTTGCTTCTAACAATGATTTTGAAGAATTTAAGGTATCTATAGCTAGCAATGTCTCCTTAATAAATAAAGTTGGCTTCTGGTATGTCCGCAAAAAGGGATCTAAACAAATTGTTCTTGAGCACAGAACCCCTTTAATGGTGGTTGTGTCCTATGGAAGTGTTGATGTTCTTAAGCTTGTACTCTCATGTCCAGAGGTTGATGTAAATTTCTCTTGTGGTAATGATAAAAGCATTGCTCTTCACTGTGTTGCTTCAGGTGGTTCGGTTAATGCAGTTGATGTTGTTAAACTGCTTTTATCCGCAGGTGCGAATATTAACTATGTGGATGCTAATGGGAACTGTCCAGTTGATGTTATTGTTGTTCCATCTAAACCTGGAGGTGTGAAAGAAATTCTTGAAGAACTTCTCACTGATAGTGATCCTGACGGCTCTGTTGATGATTGTTCTCTTCCACTATCTGTTAATTCGTCGAGTCATCGTTCAGTCGCCTCTTTATCATTAACTGAAAATGGGTCTCCATCCTCTCCTGTGGCTCCTAAGTTTACTGACGCAACTGTTAACTCAGCCTCTGAAGAGCTGCGTCCATTGTACGTGTCCACTAGATTTGCTGTTCCTTCACCCCAGTTAGCGGCATCTGCTTCTAATCCCCGTGATGGTGCTATATCAGTGAGTCGATCCGGTCGGTCCAAAACACTAACTCCATCAAATCTTGAGGATCTATTTTCTGCTAAAATTTCTTCATCTCCTCGGTATTTCGACCCAGCAACAGCTTCTGTATTTTCCCCAACACACAAATCAGCTGTCTTCAACCAGTTTCAACAGCTTCAAAGTTCACTATCACCCATCAATACAAATGTCATGTCACCCAAGAATGTTGAGCATCCTCTATTCCAAAGCTTCTGTATTTTCCCCAACACACAAATCAGCTGTCTTCAACCAGTTTCAACAGCTTCAAAGTTCACTATCACCCATCAATACAAATGTCATGTCACCCAAGAATGTTGA 1668 0.4239 MANLGKSTCGEIKKTHSSSLKRNPSEIFTKVQELAASSQNSMAMNGHKTKLNRNRRPTLTDCNGVDDDVKSDFGFPFRTLAIPATQLRLSSSDCERPQKFSLWSLSYVFFRTVGGDITFESAEFFGVESHNRLGEVKGGFRARSCFLEMRKGLMSLSPLASVFPTRSLPAKSTSQRMCSGPDKSKSRSTCSSSSAEEGSNNIKDMKNLTVHTDDSFSSLLELASNNDFEEFKVSIASNVSLINKVGFWYVRKKGSKQIVLEHRTPLMVVVSYGSVDVLKLVLSCPEVDVNFSCGNDKSIALHCVASGGSVNAVDVVKLLLSAGANINYVDANGNCPVDVIVVPSKPGGVKEILEELLTDSDPDGSVDDCSLPLSVNSSSHRSVASLSLTENGSPSSPVAPKFTDATVNSASEELRPLYVSTRFAVPSPQLAASASNPRDGAISVSRSGRSKTLTPSNLEDLFSAKISSSPRYFDPATASVFSPTHKSAVFNQFQQLQSSLSPINTNVMSPKNVEHPLFQSFCIFPNTQISCLQPVSTASKFTITHQYKCHVTQEC* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0607 555 MobiDBLite consensus disorder prediction 172 204 - -
Psa4g0607 555 MobiDBLite consensus disorder prediction 1 20 - -
Psa4g0607 555 Pfam Ankyrin repeat 300 330 IPR002110 GO:0005515
Psa4g0607 555 Gene3D - 171 380 IPR036770 -
Psa4g0607 555 SUPERFAMILY Ankyrin repeat 209 352 IPR036770 -
Psa4g0607 555 ProSiteProfiles Ankyrin repeat profile. 296 331 IPR002110 GO:0005515
Psa4g0607 555 SMART ANK_2a 261 291 IPR002110 GO:0005515
Psa4g0607 555 SMART ANK_2a 296 328 IPR002110 GO:0005515
Psa4g0607 555 PANTHER UNKEMPT FAMILY MEMBER 436 531 IPR045234 -
Psa4g0607 555 PANTHER UNKEMPT FAMILY MEMBER 199 412 IPR045234 -
Psa4g0607 555 MobiDBLite consensus disorder prediction 430 450 - -
Psa4g0607 555 ProSiteProfiles Ankyrin repeat region circular profile. 296 330 - -
Psa4g0607 555 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 436 531 - -
Psa4g0607 555 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 199 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0607 Psa-Chr4 37345487 37357212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0607 429 519 C2H2 Transcription Factor Family AT5G12850 55.789 4.94e-16 79.7