Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0599 ATGGATTCGGGCATGGAAGACGATAGAGAATCCCAATACTACTATGCACAGGGCGGAAAGATAATGCTATCCACCGTCATCATTCTCTTCATCATCACCGTCACACTCCTCTCTCTTCACCTCCTTATCCGATGGTACCTTCTCCGTAATCGCGACCGTCAACACAACCTTAGCCGGACACGCCACATTCGACGTCGGTCGTTTGTTTTCTACTTCGAGCACGACATTCCTTCCTCACTTAGGCTTGATGTCTCTCGCGGCCTCGATCCCTCTGTCATCTCGTCTCTCCCGGTGTTTAAGTATTCTTCTGAGGAACCGCCGGTGGATTGCGCTGTTTGCTTGTCGGAGTTCGAGGAAGGAGAAACGGGTCGGGTTTTGCCGAAGTGTAATCATAGTTTTCATGTCGATTGCATTGATATGTGGTTTCATACTCATTCTACGTGTCCGCTTTGTAGAAAATCAGTGGAGCTTCTTCCGGTTCATCAAACTGAACCGGAACCGGAAGTGACTATGGATGTGGGTGAACCGGAACTGGTTTTGGGTTCGAGTTTTGGGGAAGAATCCGACCGGGTTGAACCGGAGTTTACATCTTCGTATTCTCCTGAGAAGCAATCTTCGTTAGTTGGCGTGACAGTTGAAGTTCCGGGAACGAGCGAGTGTAAGCCGTCGTCTTCGTCTTTTCGGTCGCCGTTGAGTCGTGTGTTGTCGTTCACGAGAGTTCTTAGCAGAGAGAGGAAATCGAACGTTTCTGCTACGTCGGACTGTGTAGTGGAGTTAGATGCAGAACGAGGTGGAAGGGAGGAGACTCACTGA 813 0.4969 MDSGMEDDRESQYYYAQGGKIMLSTVIILFIITVTLLSLHLLIRWYLLRNRDRQHNLSRTRHIRRRSFVFYFEHDIPSSLRLDVSRGLDPSVISSLPVFKYSSEEPPVDCAVCLSEFEEGETGRVLPKCNHSFHVDCIDMWFHTHSTCPLCRKSVELLPVHQTEPEPEVTMDVGEPELVLGSSFGEESDRVEPEFTSSYSPEKQSSLVGVTVEVPGTSECKPSSSSFRSPLSRVLSFTRVLSRERKSNVSATSDCVVELDAERGGREETH* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0599 270 PANTHER RING-H2 FINGER PROTEIN ATL64 11 214 - -
Psa4g0599 270 Pfam Ring finger domain 109 152 IPR001841 -
Psa4g0599 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 157 IPR013083 -
Psa4g0599 270 SUPERFAMILY RING/U-box 93 159 - -
Psa4g0599 270 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Psa4g0599 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 11 214 - -
Psa4g0599 270 SMART ring_2 110 151 IPR001841 -
Psa4g0599 270 CDD RING-H2_PA-TM-RING 109 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0599 Psa-Chr4 37090111 37091542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0599 15 267 Rapid Response to Elicitors AT3G16720 46.290 1.65e-59 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0599 - - gmx:100791545 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0599 4 37090111 37091542 Psa4g0599 4 37090111 37091542 ECH
Psa4g0599 4 37090111 37091542 Psa1g3548 1 305454415 305456399 PCT