Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0598 ATGACAGGAGCAATTGAAAACAAACAGCATGACCAAAAGAAGAGATTCGCCGTTCTCGGTGTGTCTTCGATCTTACTTATCGCAATGGTTGCCGCAGTGGCAGTCGGTGTTTCCAACGGCGGAGACGCGGGTGAGTTATTAGGAGGTGGTGACGACCAAATTGCACAATCACAAAGGAATGTTCAAGTACTTTGTGATGCAGCCGAGTACAAAACAACCTGTGAAAAGAGTCTCTCAAAAGCTTCAACGGAAACCTCAGACATGAAGGAACTGATCAAAGCAGCATTGAATGCCACAGCTGAAGAGTTTCTCAAACAAATTGATAACTCAACACTTTACCAGGAGTTAGCTACCAATAACATGACAAAACAAGCTATGGATATTTGCCATGAAGTCCTTGGTTATGCAGTCGATGATGTTCATCAATCTATCCATACATTGGATAAATTTGATCTGACTATGATGAATGAGTATGCTTATGATCTCAAGGTTTGGCTTGCAGGTACACTTTCTCATCAACAAACATGTTTAGATGGATTTGAGGAGACAGCAACAGAAGCTGGACAAACCATGGCTAGGGTTCTTAACGCCTCTTTGGAGCTAAGTTACAATGCTTTGGATATCATTAATGGAGTTTCCGGATTCATGAAAAGTCTTAACTTGAGCTCTTTTTCAAGTGCTGCTAACAGGAAGCTTTTGTCTGAAGATGGCTTCCCAATATGGGTTAGTCAGAGTCAAAGGAAGCTTCTTGTGGCTCCTGAGAGTATTAAACCTAATGTCATTGTTGCTCAAGATGGTACTGGACAGTTTAAGACTTTGACTGAGGCTCTTGAACTTGTTCCTAACAAGAACAAAACTCCTTTTGTTATTCATGTTAAAGCTGGTGTTTATAATGAGTATGTTTCTTTGGATAAACATAAGAGTCATGTTGTTATTATTGGTGATGGTCCTACAAAGACCAAATTCACTGGCAACAAAAACTATGTTGATGGTGTTCAGACCTACAACACTGCAACATTCGGTGTGAATGCTGCTCATTTTATGGCTATCAACGTCGGTTTCGAGAACTCAGCAGGAGCAGAGAAGCATCAAGCAGTTGCCCTCCGTGTCACCGCCGATCAAGCAGTTTTCTACAACTGTCAAATGGACGGTTTCCAAGATACACTCTACACACAATCCAAAAGACAATTCTACCGCGACTGCACGGTCTCTGGAACCATCGACTTCATCTTCGGTGATGCTGTCGGAGTTTTCCAAAACTGCAAACTCATTGTCAGGATGCCAATGGAGAGTCAACAATGCATGGTAACAGCCGGAGGAAGAACCAAAATCGACAGTCCATCAGGCCTTGTTTTCCAAAGCTGTCACTTCACCGGAGAACCCGAAGTTCTTACCTTGGACCCCAAGATAGCTTATTTGGGAAGACCGTGGAGAAATTTCTCTAAGGTTGTTATCATGGATTCTGACATTGATGATATCTTTGTACCAGAGGGTTATATGCCATGGATGGGAAGTCTTTACAAAGAAACATGCACTTATTATGAATACAACAACAAGGGTCTTGGTGCTAAGACTGACGAAAGAGTGAAATGGCCCGGTGTTAAAGCCATAGCTGCAAATGTTGCTGCTGATTATTATCCAGGCAAGTTTTTTGAACTTGCAAACTCAACTCTACGTGATGCTTGGATTGTTCAATCTGGAATTCCTTATTCAATTGGACCACTTGCAGCTACGGCATAA 1740 0.4207 MTGAIENKQHDQKKRFAVLGVSSILLIAMVAAVAVGVSNGGDAGELLGGGDDQIAQSQRNVQVLCDAAEYKTTCEKSLSKASTETSDMKELIKAALNATAEEFLKQIDNSTLYQELATNNMTKQAMDICHEVLGYAVDDVHQSIHTLDKFDLTMMNEYAYDLKVWLAGTLSHQQTCLDGFEETATEAGQTMARVLNASLELSYNALDIINGVSGFMKSLNLSSFSSAANRKLLSEDGFPIWVSQSQRKLLVAPESIKPNVIVAQDGTGQFKTLTEALELVPNKNKTPFVIHVKAGVYNEYVSLDKHKSHVVIIGDGPTKTKFTGNKNYVDGVQTYNTATFGVNAAHFMAINVGFENSAGAEKHQAVALRVTADQAVFYNCQMDGFQDTLYTQSKRQFYRDCTVSGTIDFIFGDAVGVFQNCKLIVRMPMESQQCMVTAGGRTKIDSPSGLVFQSCHFTGEPEVLTLDPKIAYLGRPWRNFSKVVIMDSDIDDIFVPEGYMPWMGSLYKETCTYYEYNNKGLGAKTDERVKWPGVKAIAANVAADYYPGKFFELANSTLRDAWIVQSGIPYSIGPLAATA* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0598 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 56 211 IPR006501 GO:0004857
Psa4g0598 579 PANTHER PECTINESTERASE 8 576 - -
Psa4g0598 579 Gene3D - 256 575 IPR012334 -
Psa4g0598 579 PANTHER PECTINESTERASE 8 576 - -
Psa4g0598 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 211 IPR035513 -
Psa4g0598 579 Pfam Pectinesterase 259 550 IPR000070 GO:0030599|GO:0042545
Psa4g0598 579 SMART PMEI_2 56 208 IPR006501 GO:0004857
Psa4g0598 579 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Psa4g0598 579 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Psa4g0598 579 CDD PMEI-like_3 64 214 - -
Psa4g0598 579 Pfam Plant invertase/pectin methylesterase inhibitor 61 208 IPR006501 GO:0004857
Psa4g0598 579 SUPERFAMILY Pectin lyase-like 256 551 IPR011050 -
Psa4g0598 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 212 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0598 Psa-Chr4 37065408 37067778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0598 7 576 Carbohydrate Esterase AT3G05610 43.902 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0598 K01051 - gmx:100800194 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0598 4 37065408 37067778 Psa4g0598 4 37065408 37067778 ECH
Psa4g0598 4 37065408 37067778 Psa1g3550 1 305556258 305558827 PCT