Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0593 ATGAGAACTAGACCTGACCCAACAAAAGGAAAGAAAAACAAAATGAAAAGAAAAATATTAGAATATTTTCCTAGGAAGGAAGCTTTGTCCAAGGCCATTGCTAAGCATTTTGATGCAAGACTACTCATTGTGGATTTACTTTCATTTTCGGCTGTAACTAAAGCCGGTTCTTCTAATAAAAGAATTTCCAAGGACAAAATATTATTGAAAGAGCAGTTATTGAAAGCAGGTTCTAGAGTATCATATGAGAATGAACTTGGTGTCAACTTTCCAGGGGAACCCGTGAATGGCTCTACCGGCTTAATTCTCCTTTATTTTGAAGATAATAGTCGTGCAAAAGTTGGAGTGAGGTTTGATAAACCTTTTAAAGGTGGCAATGACCTTGGAGGAATTTGTGAAGTTGGTTACGGTTATTTCTGTAATGCTCGATATTTAAACTTGCTTGAAACTCAAAATGAAGGGGATGACTTTAACAAAAAGCTCGTGAACAGAATATTTGAGTTTGCTTCCAATCAAGGTGAAAAAGGTTCACTTGTTGTCCTCCTTCAAAACTTAGAGAAGGTTGTAGAGGGAGAATGGCATGTATTGAAGAATGTAGTTGAAAATTTGCCATCTAACGTTGTGTTAATAGTGTCTCACACACAAGTCTTTGAAGAGAAGACCCAACCTAATCAAAGACAAGGGCTGTCACAATTTCAATTACTCGAGAAACGGAGTAGACAGATTGAAGGAAGCAACAATCCCACTGATGAACTTATGGAGCAAATTGGTGGCCTTTTCCCCAATAAGTTGACCATACATCTCCCTAAGGATCATACCTCACTATCTCGTTGGAAGCAGCAGTTGGAGCATCATGTTAAAAGTATAAATGCTCAGTTAAATGCCGTCACCATTCGCTCTATTATGAACAAAAGTGCTATGCATTGCCCAGACTTTGAGTCTCTTTATATTGACGATCAAGCACTAACCACTCAGAATGCACACAAAATTATTGGCTGGGCTTTAAGTTATCCTGGTGTTACTGTTAAAGACTCTTCTATAGTTTTGTCTTCGGAAAGCATTAGTTATGGGCACAACATTTTGAAGAAGATTCAAAATTCAGAAAAGAAGTTAAATAATTCAGTAAAGGATGTTTTTATTGACGGTGAGCTTGAGGAGAAAGTGATGGCTGATGTTATATCTCCCAGTGATATTGGAATCACTTTTAACGATATTGGAGCATTAGAAAATGTAAAAAATACTTTGAGAGAATTGATTATGCTTCCTCTTCAGAGGCCGGAGTTGTTTAGCAAAGGGCAACTTACTAAGCCATGCAAGGGAATACTACTTTTTGGTCCCCCTGGCACTGGGAAAACAATGCTGGCAAAGGCCATAGCTACTGAAGCTGGGGCAAATTTTATCAATGTTTCATTGTCCAGCATTATTTCCAAGTGGTCTGGCGAATCTGAAAAGTATATAAAAGCACTATTTTCTATAGCTCACAAAATAGCACCAACCGTAATTTTTATAGATGAGGTGGACAGTTTGCTAGGGAGACGTGGAGGAGCAGATAGTTCGTATAATGATGCTCATTATAACAAAATTAAGACAGAGTTTTTTGTCCATTGGGACGGTCTCCGCACAAACGAAAACAACCGCGTACTTGTTCTTACCGCTACTAATAGGCCGTGGGATCTTGACGACGCTGTTATCAGGAGGCTCCCAAGAAGATTACTGATTAATTTACCGGACGCTTCAAACCGTGAAAAAATACTTAAGTTGATATTAGCTGCCGATCATTTGTCAATGGATGTTGATTTAGAAGAACTGGCTAATAAGACTAGTGGTTACTCCGGAAGTGATCTCAAGGATTTGTGTGTGGCAGCTGCCTACTGTCCTATTAGGGAGAGATTAGAGATAGAAAAAAAGGAGGGAAGTGAGTTATATAGCAGCGTAGATATCCGTCCATTAAAGATGGAGGATCTGTTGCATGCCTTAAAAGAAGTTCGGGCTAGTTTCAAGCTTGACTCATCTATTATGGATGAACTGCGCAAATGGAATGAGCAGTTTGGAGGGGCTGCAGATGAGTCTAAAGAAGAGAGATACATGAATTATTTCATCTAG 2103 0.3885 MRTRPDPTKGKKNKMKRKILEYFPRKEALSKAIAKHFDARLLIVDLLSFSAVTKAGSSNKRISKDKILLKEQLLKAGSRVSYENELGVNFPGEPVNGSTGLILLYFEDNSRAKVGVRFDKPFKGGNDLGGICEVGYGYFCNARYLNLLETQNEGDDFNKKLVNRIFEFASNQGEKGSLVVLLQNLEKVVEGEWHVLKNVVENLPSNVVLIVSHTQVFEEKTQPNQRQGLSQFQLLEKRSRQIEGSNNPTDELMEQIGGLFPNKLTIHLPKDHTSLSRWKQQLEHHVKSINAQLNAVTIRSIMNKSAMHCPDFESLYIDDQALTTQNAHKIIGWALSYPGVTVKDSSIVLSSESISYGHNILKKIQNSEKKLNNSVKDVFIDGELEEKVMADVISPSDIGITFNDIGALENVKNTLRELIMLPLQRPELFSKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINVSLSSIISKWSGESEKYIKALFSIAHKIAPTVIFIDEVDSLLGRRGGADSSYNDAHYNKIKTEFFVHWDGLRTNENNRVLVLTATNRPWDLDDAVIRRLPRRLLINLPDASNREKILKLILAADHLSMDVDLEELANKTSGYSGSDLKDLCVAAAYCPIRERLEIEKKEGSELYSSVDIRPLKMEDLLHALKEVRASFKLDSSIMDELRKWNEQFGGAADESKEERYMNYFI* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0593 700 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN-RELATED 53 699 - -
Psa4g0593 700 Gene3D - 400 667 IPR027417 -
Psa4g0593 700 Pfam ATPase family associated with various cellular activities (AAA) 441 573 IPR003959 GO:0005524|GO:0016887
Psa4g0593 700 ProSitePatterns AAA-protein family signature. 547 566 IPR003960 GO:0005524|GO:0016887
Psa4g0593 700 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 53 699 - -
Psa4g0593 700 SMART AAA_5 437 577 IPR003593 -
Psa4g0593 700 CDD AAA 439 575 - -
Psa4g0593 700 Pfam AAA+ lid domain 597 632 IPR041569 -
Psa4g0593 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 669 IPR027417 -
Psa4g0593 700 Gene3D - 576 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0593 Psa-Chr4 36891340 36900754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0593 400 635 Calmodulin-binding Proteins AT3G56690 39.496 6.17e-44 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0593 - - gmx:100801477 672.159