Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0586 ATGGAGAATTCGACGAAAGAACAAGGTGGTGGTGGTGGTAGTGGTGGTCCGACAGAGTTCCTAGTGAAAATTTACCAGATGGTTGATGATCCATATACTGATAATATTGTCTCATGGAGTCAAAGCAACAACAGTTTCATCATTAAGGACCCTGATGAATTCGCTACCAATCTTCTTAGCAAGTATTTCAGACCACAACAATTTCTCCAACTTTGTTTGTCAGCTCAATACCTATGGATTTCACAAAATAAAACATGA 258 0.3876 MENSTKEQGGGGGSGGPTEFLVKIYQMVDDPYTDNIVSWSQSNNSFIIKDPDEFATNLLSKYFRPQQFLQLCLSAQYLWISQNKT* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0586 85 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 68 IPR027725 -
Psa4g0586 85 SMART hsfneu3 16 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0586 85 Gene3D - 17 73 IPR036388 -
Psa4g0586 85 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4D 14 68 - -
Psa4g0586 85 SUPERFAMILY "Winged helix" DNA-binding domain 16 69 IPR036390 -
Psa4g0586 85 PRINTS Heat shock factor (HSF) domain signature 20 43 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0586 85 PRINTS Heat shock factor (HSF) domain signature 58 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0586 85 Pfam HSF-type DNA-binding 20 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0586 Psa-Chr4 35417077 35417579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0586 17 68 HSF AT4G17750 59.615 1.93e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa4g0586 HSF_DNA-bind 2.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0586 K09419 - psom:113287207 77.4109