Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0580 ATGGCTTCAGCACACATCAGAGACATTCTAACTGCTTTCAATCCTTCTCTCGATTTCTTCGCCATAACCTCCGGCGACGGTCGAATTAAGATATGGGATACGCTCAAGGGTCAAGTACAAACCGAGTTCGCGGATTTCACTTCAACTCATGATACTAATTTATTTGATACAAAAGGACATCTCTCTGTTGATTACACATGTATCAAGTGGATGTCTTTTGAAAGAAAGAAGAAAAGGAAACACTCATCCTCTTTGTTGGTGCTTGGAACTGGTAGTGGTGATGTTCTAGCACTTGATGTTTCTGCTGGTCAATTGTCTTGGAAAATTAATGATTGTCATCCTGGAGGTGTCAGGGCCATTTCGTCTTTGGCAAATGGATCAACCTTTTATACTTCAGGTGCGGACGGAATGATATGCGCAATAGATTTCACGACAGGAAACCTGCTGGAGAAGTTTAAAGCTTCTTCGAAGGCAGTAACTTCTATATCAGTCTCTCCGGATGGCAAGAAATTAGCTACTGCAGCAGCACAGTTGAAGATTTTTAACTGTTCTAATAAAAAAAAGATTGAAAAATTCTCTGGTCATCCTGGATCTGTTCGGTGTATGGTCTTCACCGAAGATGGCAAGTATATCCTTTCGACTGCCGCTGCTGAAAGATATGTTGCTGTTTGGAAACTAGATGGCACTAAAAAGCAGTCTGCCAGTTGTGTTCTTGCAATGGAGCACCCTGCTGTTTTTCTTGATAGCAGGTGCATTGATAAAGGAGAAGATGATGAGGCTGTGTTATGTGTTTTAGCCATATCAGAAGTTGGTGTTTGTTATTTATGGTTTGGAAATAGTATTGAGGAACTACGGAGTGCAAAACCCACAAAAATATCATTATCATTGGAAGATATGTCCACCAAAAATTACAAAGGCGCACTCCCTGCAATATATGCAGCAAAATTACAAAGCATCCAGAAGCCGGCCTCTGGGCAGGTTTTTCTTGTTTCTGGAATGCTTGTAAAACCATCTTTTCAAAATATTCTATTGCACTCCGGTACAGACGTGAAGTTGAGTGTCTCTCGTGATGGCGTTCTTCTTCCAATGAGTCAATCTATAGTCAAGTCTAAGAAGAGGACAGATGTACAAAGAGTAACTGCACTAGATCGTGCTAATGCTGAGGATGCCTTGCTTCCAATTCCTAAAGTTTTTGATTCTCATGAGAAAGATAAATCATTTCAAGTCATTTCGGGCAAGGATGTAAAGGACGATTTGCTTACAAGTGGCACTGATTCCATGGAAATAGACGATGGTACTGTCGAAAGTGAGACTGGTGTAATTAGCATGGAAGACCGGATGAGATCACTAGGATTGCTTTACAGTGAGAATGATTGTGCATCAAATTTTGAACTTTGTTCTAAATTGTTAAAGGGTATTGATCTGGAAGCCACTCTTCCAAAGAAAAAGGTAAGAGCAGCTGTTTTGTCTATGGAACCAAGTGAAGCATTCAAGCTACTAGAAGTGTTGCTGGTTATATGGCAATCAAGGTCGTCTAGCAGGGAGTCTGTGCTTCCATGGATGTACAGCATAGTAGTTACTCATGGTCATAATGCTGCTGAAGAATCTGCAACACATATGCTTGATTCGGTGTACAAGATTACAAGTTCCAGAGCGACAAGTCTTCAGTCTTTGTTACAATTATCAGGTCGTCTACAACTGGTTACATCGCAGATTGATAAGGCTTCTCAGAAAATAAGCCATCCGGTGAATGATCTCCAAACAGAAGAAAGTGAAGACGAGGGTGAATATTATCACGAGGATGACGACGATGAAGAAGATGATGCATCCGAAATAAGTACAGATGATGAAAACTAG 1857 0.4076 MASAHIRDILTAFNPSLDFFAITSGDGRIKIWDTLKGQVQTEFADFTSTHDTNLFDTKGHLSVDYTCIKWMSFERKKKRKHSSSLLVLGTGSGDVLALDVSAGQLSWKINDCHPGGVRAISSLANGSTFYTSGADGMICAIDFTTGNLLEKFKASSKAVTSISVSPDGKKLATAAAQLKIFNCSNKKKIEKFSGHPGSVRCMVFTEDGKYILSTAAAERYVAVWKLDGTKKQSASCVLAMEHPAVFLDSRCIDKGEDDEAVLCVLAISEVGVCYLWFGNSIEELRSAKPTKISLSLEDMSTKNYKGALPAIYAAKLQSIQKPASGQVFLVSGMLVKPSFQNILLHSGTDVKLSVSRDGVLLPMSQSIVKSKKRTDVQRVTALDRANAEDALLPIPKVFDSHEKDKSFQVISGKDVKDDLLTSGTDSMEIDDGTVESETGVISMEDRMRSLGLLYSENDCASNFELCSKLLKGIDLEATLPKKKVRAAVLSMEPSEAFKLLEVLLVIWQSRSSSRESVLPWMYSIVVTHGHNAAEESATHMLDSVYKITSSRATSLQSLLQLSGRLQLVTSQIDKASQKISHPVNDLQTEESEDEGEYYHEDDDDEEDDASEISTDDEN* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0580 618 SUPERFAMILY WD40 repeat-like 12 227 IPR036322 GO:0005515
Psa4g0580 618 Pfam WD domain, G-beta repeat 188 225 IPR001680 GO:0005515
Psa4g0580 618 Pfam WD domain, G-beta repeat 4 33 IPR001680 GO:0005515
Psa4g0580 618 Gene3D - 3 140 IPR015943 GO:0005515
Psa4g0580 618 Gene3D - 141 264 IPR015943 GO:0005515
Psa4g0580 618 Pfam Dip2/Utp12 Family 479 569 IPR007148 -
Psa4g0580 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 234 IPR001680 GO:0005515
Psa4g0580 618 SMART WD40_4 145 182 IPR001680 GO:0005515
Psa4g0580 618 SMART WD40_4 185 225 IPR001680 GO:0005515
Psa4g0580 618 SMART WD40_4 102 142 IPR001680 GO:0005515
Psa4g0580 618 SMART WD40_4 2 33 IPR001680 GO:0005515
Psa4g0580 618 MobiDBLite consensus disorder prediction 589 618 - -
Psa4g0580 618 PANTHER OS03G0300300 PROTEIN 1 618 - -
Psa4g0580 618 PANTHER OS03G0300300 PROTEIN 1 618 - -
Psa4g0580 618 MobiDBLite consensus disorder prediction 577 618 - -
Psa4g0580 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0580 Psa-Chr4 35063722 35069830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0580 107 226 U-box Gene Family AT2G33340 34.677 9.95e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0580 K14546 - gmx:100815458 845.884