Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0579 ATGGTTAATTTCCCATCTTTTGTAAACGGATTGGCAAGAACTATGTCAATCAAGAAAGACAAGAATCTTCAAAAGGACGATGCAAGAAAAGAAGTGGAAGAATTGGCAAAAGAAGCAAGGAAGAATGAGTTGTTGTTGAGTTCTTCTGGAGTTGTTAAGTCCAACAAAGACAATAGTTTTGTTTCTGTTTTTACACATAGAGGCCAAAAAGGAGTCAACCAAGATCGTCTTATTGTTTGGGAGGAATTTGGTTGCCAACAAGATATGATGTTTTGTGGAGTTTTTGATGGACATGGTCCTTGGGGACACTTTGTAGCTAAAAGGGTGAGGAAATTAGTTCCATCCCTTTTGCTATGTAATTGGCAACAAAGTCTTGCTGCAACATCTATTGACCTAGATTTTAAGGTTGAAGAAAACAAAAACATTCATGGATTGAACTTATGGGAACAATCGTATTTAAAGACTTTTGCTGCGGTTGACCAAGATCTAAAGCAGCATACTGGAATTGATTCATTTCGAAGTGGCACCACAGCTTTGACAATGATCAAACAGGGTGAAAACCTTATTATAGCAAATGTGGGAGATTCAAGACTTGTATTAGCAACCACTTCAGAAGATGGCACATTACTTGCACTTCAGCTTACCACTGACTTCAAACCAAATTTACCAAAGGAGGCAGAGAGGATAGAAGAATCAAAAGGGGTTGTGTTTTGTATGAAAGATGAACCAGGAGTGTACAGGGTTTGGATGCCAAATGGTAAAACACCAGGATTAGCAATATCAAGAGCATTTGGTGACTATTGTATGAAAGAGTATGGTTTAATTTCTGTGCCAGAAGTGACACATAGAAAAGTTACCACTAGGGATCAATTTATCATCTTAGCAACAGATGGGGTATGTATGTGTATAATCTTTGTGCATGTATATGATTTTAAGAAATTAATTAGTAATTTTGTTACTATCTGTTTAGGTTTGGGATGTTGTATCGAACGAAGAGGCAGTGAAGATTGTTTGTGCATCGGGAGATAA 1029 0.3722 MVNFPSFVNGLARTMSIKKDKNLQKDDARKEVEELAKEARKNELLLSSSGVVKSNKDNSFVSVFTHRGQKGVNQDRLIVWEEFGCQQDMMFCGVFDGHGPWGHFVAKRVRKLVPSLLLCNWQQSLAATSIDLDFKVEENKNIHGLNLWEQSYLKTFAAVDQDLKQHTGIDSFRSGTTALTMIKQGENLIIANVGDSRLVLATTSEDGTLLALQLTTDFKPNLPKEAERIEESKGVVFCMKDEPGVYRVWMPNGKTPGLAISRAFGDYCMKEYGLISVPEVTHRKVTTRDQFIILATDGVCMCIIFVHVYDFKKLISNFVTICLGLGCCIERRGSEDCLCIGR* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0579 342 PANTHER PROTEIN PHOSPHATASE 2C 41-RELATED 1 300 - -
Psa4g0579 342 Gene3D - 46 311 IPR036457 -
Psa4g0579 342 Coils Coil 18 45 - -
Psa4g0579 342 CDD PP2Cc 60 299 IPR001932 -
Psa4g0579 342 Pfam Protein phosphatase 2C 85 300 IPR001932 -
Psa4g0579 342 ProSiteProfiles PPM-type phosphatase domain profile. 60 342 IPR001932 -
Psa4g0579 342 PANTHER ALPHABET, ISOFORM E-RELATED 1 300 - -
Psa4g0579 342 SUPERFAMILY PP2C-like 56 300 IPR036457 -
Psa4g0579 342 SMART PP2C_4 51 342 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0579 Psa-Chr4 34998185 35000382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0579 1 299 PP2C-type Phosphatase Gene Family AT5G27930 60.133 1.94e-135 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0579 - - gmx:100814087 518.079