Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0540 ATGGGAAGATCTCCTTGCTGTGAGAAAATTGGTTTGAAGAAAGGAAGATGGACTGCTGAGGAAGATAAGATCTTAACTGATTATATACAGGAAAATGGTGAGGGGTCATGGAGATCTTTGCCAAAGAATGCAGGGTTGTTGAGATGTGGGAAGAGCTGCAGATTGAGATGGATAAACTACTTGAGGTCAGATGTGAAGAGAGGTAACATCACTCCACAGGAGGAAGAAATCATTGTCAAGCTGCATGCTGTTCTTGGTAACAGGTGGTCGGTAATAGCGGGGCATTTACCGGGAAGAACCGATAATGAGATAAAAAACTATTGGAATTCTCATTTAAGGAGAAAGATTTACTGTTTCATGAAGTCATTAAATGAATCACTTCCTCCCATTGACATAGCTGCTGTAAACCTAGCTGCTGCTTCCAAGAGAAGAGCAAGTAGAGGAGCTTCAACGACTCAACATGCACCAAAGCAAGATCAAACCAAAAACAACAAGAAATATGAGGTACTTCAAGTTCAACCACCAACAACACTACATCAAAGAAAAGAAAATGCTTCTAGGGCAGAAGAAGAGCCACAACAACAAGGTTACAATACAAGTAACTCATCATTTCCTAACATGGATGAATTAGTTGACACTTTGGAACCATATGAATGGTTGGATGATGAAATTATAAAACTAAGTTACATGTTTGAAAGTGGAGTACTTGTTAGTCCAGATCATATGAATAATGAGAATAATAATAACATTGTAACATGTGATGAGAATATTATTCTCGATCCTAATTGTGGAATACTAGTGGGAAATCATGGTGGTGTTGGTGGTGATCTTTGGAGTTCATCAAATGGAGCTGAAAGTGGAGAGTGGAATAATAATACTAATAACAGTACTAGCTGTAATTCTTCTGTAAATTCTGTTTATGATTATCAGTGGCCTGATATACATTTAGAAGGTAGCTGTATTCAACAATGGGACCTATGTGAACAAGATCAAGATGTTAATTGCTTTTGGGAAACTCCTAATTATCAAGTAAATGGATTTTATTAG 1047 0.3734 MGRSPCCEKIGLKKGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPPIDIAAVNLAAASKRRASRGASTTQHAPKQDQTKNNKKYEVLQVQPPTTLHQRKENASRAEEEPQQQGYNTSNSSFPNMDELVDTLEPYEWLDDEIIKLSYMFESGVLVSPDHMNNENNNNIVTCDENIILDPNCGILVGNHGGVGGDLWSSSNGAESGEWNNNTNNSTSCNSSVNSVYDYQWPDIHLEGSCIQQWDLCEQDQDVNCFWETPNYQVNGFY* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0540 348 Gene3D - 71 116 - -
Psa4g0540 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa4g0540 348 CDD SANT 16 61 IPR001005 -
Psa4g0540 348 SMART sant 13 63 IPR001005 -
Psa4g0540 348 SMART sant 66 114 IPR001005 -
Psa4g0540 348 MobiDBLite consensus disorder prediction 144 205 - -
Psa4g0540 348 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa4g0540 348 PANTHER MYB TRANSCRIPTION FACTOR 2 278 - -
Psa4g0540 348 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 278 - -
Psa4g0540 348 CDD SANT 71 112 IPR001005 -
Psa4g0540 348 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa4g0540 348 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa4g0540 348 MobiDBLite consensus disorder prediction 190 205 - -
Psa4g0540 348 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa4g0540 348 Gene3D - 13 66 - -
Psa4g0540 348 MobiDBLite consensus disorder prediction 165 181 - -
Psa4g0540 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa4g0540 348 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0540 Psa-Chr4 33635226 33636664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0540 1 227 MYB Transcription Factor Family AT5G49330 55.507 1.63e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa4g0540 Myb_DNA-binding 4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0540 K09422 - gmx:100805532 412.149